View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21577_low_5 (Length: 405)
Name: NF21577_low_5
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21577_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 4 - 374
Target Start/End: Complemental strand, 40381548 - 40381177
Alignment:
| Q |
4 |
attctaacacataattggctcaaaactagcacatactaactaaaatctaattatatttttccttctcctaggtttttggattaacaactagcactgttac |
103 |
Q |
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| T |
40381548 |
attctaacacttaattggctcaaaactagcacatactaactaaaatctaattatatttttccttctcctaggtttttggattaacaactagcactgttac |
40381449 |
T |
|
| Q |
104 |
aaaatttaataaaccagatacagaaaaaataaaatagttctcctgttaatatttctaaaacttagcaacggaattataaacaaattttgtattttgtctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381448 |
aaaatttaataaaccagatacagaaaaaataaaatagttctcctgttaatatttctaaaacttagcaacggaattataaacaaattttgtattttgtctt |
40381349 |
T |
|
| Q |
204 |
taattatggccgccaagtgtagaac-nnnnnnnnnatcttaaccatctggagtttgcctgaaaggtaaataaagtggtctgactaagaattgttctcgtc |
302 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381348 |
taattatggccgccaagtgtagaacttttttttttatcttaaccatccagagtttgcctgaaaggtaaataaagtggtctgactaagaattgttctcgtc |
40381249 |
T |
|
| Q |
303 |
aggatttgaactcgaatacttccgaacaattcacttttaactagagtttatcaaccacttgagttctcaatc |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
40381248 |
aggatttgaactcgaatacttccgaacaattcacttttaactagagttcatcaaccacttgagctctcaatc |
40381177 |
T |
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