View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21577_low_6 (Length: 383)
Name: NF21577_low_6
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21577_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 5950516 - 5950870
Alignment:
| Q |
19 |
actggtcgtccacagaacaaaaattcaagtcgaaatatgtatatgaagagcataacgagctgtcatcatcgaacgtatcatctacaaaaacagtttatca |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
5950516 |
actggtcgtccacagaacaaaaattcaagtcggaatatgtatatgaagagcataacgagctgtcataatcaaacgtatcatctacaaaaacagtttatca |
5950615 |
T |
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| Q |
119 |
ggtcaatcatttcaggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgtaccatggtgccagcgatatccatttgata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5950616 |
ggtcaatcatttcaggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgtaccagggtgccagcgatatccatttgata |
5950715 |
T |
|
| Q |
219 |
tgtcatcagctctattgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaatgatgataacgacgaggacttgcattatt |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950716 |
tgtcatcaactctattgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaatgatgataacgacgaggacttgcattatt |
5950815 |
T |
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| Q |
319 |
ctcgtcgtctggataactgttcgtcctatctggaagtagcattgatatctctgct |
373 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950816 |
ctcgtcgtcttgataactgttcgtcctatctggaagtagcattgatatctctgct |
5950870 |
T |
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