View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21577_low_7 (Length: 374)

Name: NF21577_low_7
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21577_low_7
NF21577_low_7
[»] chr4 (2 HSPs)
chr4 (22-364)||(9912201-9912544)
chr4 (148-225)||(32430589-32430666)
[»] chr7 (1 HSPs)
chr7 (148-226)||(5617937-5618015)
[»] chr5 (2 HSPs)
chr5 (148-214)||(30513898-30513964)
chr5 (148-214)||(30554238-30554304)
[»] chr8 (2 HSPs)
chr8 (169-223)||(9106738-9106792)
chr8 (148-209)||(28798920-28798981)
[»] chr6 (1 HSPs)
chr6 (169-214)||(16126469-16126514)
[»] chr1 (2 HSPs)
chr1 (169-216)||(32711733-32711780)
chr1 (151-199)||(17694750-17694798)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 9912201 - 9912544
Alignment:
Q  22 actctcttgccaaagacgaccccaagcatgagtagcagcaaattctatagcaataattaa-cgaaaattannnnnnngacatacaaaacttccgaaaaca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        |||| | |||||||| |||||||    
T  9912201 actctcttgccaaagacgaccccaagcatgagtagcagcaaattctatagcaataattaaacgaaaattgtttttttgacacataaaacttctgaaaaca 9912300  T
Q  121 catgtaaatgatatttttgttctcagtggtagttaactatcgttgtgctttttaatctttttcatgtgtttctaggaaacattcaatgtcagaaaaataa 220  Q
    ||||||||||||||||||| || |||  ||||||||||  || ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||    
T  9912301 catgtaaatgatatttttgctcccagcagtagttaactgccgctgtactttttaatctttttcatatgtttctaggaaacattcaatgtcaaaaaaacaa 9912400  T
Q  221 ccatctaaataaacatgtcaaatcggctcgaaaaaccagcacatccccttggctactagaaaaacagaccataaaagtacctctatgattacggaaaata 320  Q
     |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  9912401 tcatctaaataaacatgtcaattcggctcgaaaaaccggcacatccccttggctactagaaaaacagaccatagaagtacttctatgattacggaaaata 9912500  T
Q  321 ccaccaccaaaaaccttactagcacacaaagaaccataagtatt 364  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  9912501 ccaccgccaaaaaccttactagcacacaaagaaccataagtatt 9912544  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 32430589 - 32430666
Alignment:
Q  148 ggtagttaactatcgttgtgctttttaatctttttcatgtgtttctaggaaacattcaatgtcagaaaaataaccatc 225  Q
    |||||||||||| || ||  ||||||| |||||||||||||||| ||||||||||||||||||||||||  |||||||    
T  32430589 ggtagttaactaccgctgaactttttagtctttttcatgtgtttataggaaacattcaatgtcagaaaagcaaccatc 32430666  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 5617937 - 5618015
Alignment:
Q  148 ggtagttaactatcgttgtgctttttaatctttttcatgtgtttctaggaaacattcaatgtcagaaaaataaccatct 226  Q
    |||| ||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  5617937 ggtaattaactaccgctgggctttttagtctttttcatgtgtttctaggaaacattcaatgtcagaaaagcaaccatct 5618015  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 30513898 - 30513964
Alignment:
Q  148 ggtagttaactatcgttgtgctttttaatctttttcatgtgtttctaggaaacattcaatgtcagaa 214  Q
    |||||||||||| || || |||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  30513898 ggtagttaactaccgctgggctttttagtctttttcatgtgtttctagaaaatattcaatgtcagaa 30513964  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 30554238 - 30554304
Alignment:
Q  148 ggtagttaactatcgttgtgctttttaatctttttcatgtgtttctaggaaacattcaatgtcagaa 214  Q
    |||||||||||| || || |||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  30554238 ggtagttaactaccgctgggctttttagtctttttcatgtgtttctagaaaatattcaatgtcagaa 30554304  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 9106792 - 9106738
Alignment:
Q  169 tttttaatctttttcatgtgtttctaggaaacattcaatgtcagaaaaataacca 223  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| || |||||    
T  9106792 tttttaatctttttcatgtgtttctggaaaacattcaatgtcagaacaacaacca 9106738  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 28798981 - 28798920
Alignment:
Q  148 ggtagttaactatcgttgtgctttttaatctttttcatgtgtttctaggaaacattcaatgt 209  Q
    ||||||||||||  | || |||||||| |||||||||||||||| ||| |||||||||||||    
T  28798981 ggtagttaactacagctgggctttttagtctttttcatgtgtttatagaaaacattcaatgt 28798920  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 16126514 - 16126469
Alignment:
Q  169 tttttaatctttttcatgtgtttctaggaaacattcaatgtcagaa 214  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||    
T  16126514 tttttaatcttttttatgtgtttttaggaaacattcaatgtcagaa 16126469  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 32711780 - 32711733
Alignment:
Q  169 tttttaatctttttcatgtgtttctaggaaacattcaatgtcagaaaa 216  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  32711780 tttttaatctttttcatgtgtttttagaaaacatttaatgtcagaaaa 32711733  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 17694798 - 17694750
Alignment:
Q  151 agttaactatcgttgtgctttttaatctttttcatgtgtttctaggaaa 199  Q
    |||||||||||| || | ||||||||| |||| ||||||||||||||||    
T  17694798 agttaactatcgctgagttttttaatcattttgatgtgtttctaggaaa 17694750  T

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