View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21577_low_8 (Length: 355)
Name: NF21577_low_8
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21577_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 47783433 - 47783773
Alignment:
| Q |
1 |
tggtgtgcaaaattattcatatctacgatgactctagaatttcaagtcgtggggatgatattctattataagaaaaattaacaacatacactgccatata |
100 |
Q |
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| T |
47783433 |
tggtgtgcaaaattattcatatctacgatgactctagaatttcaagtcgtggggatgatattctattataagaaaaattaacaacatacactgccatata |
47783532 |
T |
|
| Q |
101 |
ggtatgtcagggggtgtcatggagtctcgctttgttccatttttgctcaatttgttatcacttatgaccgatagacacatgagatagaccaatatgacat |
200 |
Q |
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| T |
47783533 |
ggtatgtcagggggtgtcatggagtctcgctttgttccatttttgctcaatttgttatcacttatgaccgatagacacatgagatagaccagtatgactc |
47783632 |
T |
|
| Q |
201 |
attagtggagttcacttnnnnnnnnnnnnccctctaactaccacttatgtctatctctatcataaatggacaacaaataaagcaaagtaaatgaagtaaa |
300 |
Q |
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| T |
47783633 |
attagtggagttcactt-aaaaaaaagacccttctaactaccacttatgtctatctctatcataaatggacaacaaataaagcaaagtaaatgaagtaaa |
47783731 |
T |
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| Q |
301 |
gccgaattgtgttcatgggcaaagccgatggagggggtgatg |
342 |
Q |
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| T |
47783732 |
gtcacattgtgttcatgcgcaaagcctatggagggggtgatg |
47783773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 8369887 - 8369798
Alignment:
| Q |
1 |
tggtgtgcaaaattattcatatctacgatgactctagaatttcaagtcgtggggatgatattctattataagaaaaattaacaacatacact |
92 |
Q |
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| T |
8369887 |
tggtgtgcaaaat-attcatatctacgataactctagaatttcaagtcgtggggatgatattctattataag-aaaattaacagcatacact |
8369798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 16875099 - 16875150
Alignment:
| Q |
242 |
cacttatgtctatctctatcataaatggacaacaaataaagcaaagtaaatg |
293 |
Q |
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| T |
16875099 |
cacttgtgtctatctctctcataaatggacaataaatggagcaaagtaaatg |
16875150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 43700621 - 43700567
Alignment:
| Q |
246 |
tatgtctatctctatcataaatggacaacaaataaagcaaagtaaatgaagtaaa |
300 |
Q |
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|||||||||||||||||||| | |||| ||||||| ||||||||||| |||||| |
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| T |
43700621 |
tatgtctatctctatcataagtacacaataaataaaacaaagtaaatggagtaaa |
43700567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 44534452 - 44534402
Alignment:
| Q |
250 |
tctatctctatcataaatggacaacaaataaagcaaagtaaatgaagtaaa |
300 |
Q |
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||||||||| | |||||||||||| |||||||| ||| ||||||||||||| |
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| T |
44534452 |
tctatctcttttataaatggacaataaataaagtaaaataaatgaagtaaa |
44534402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 10631188 - 10631152
Alignment:
| Q |
242 |
cacttatgtctatctctatcataaatggacaacaaat |
278 |
Q |
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||||| ||||||||||| ||||||||||||||||||| |
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| T |
10631188 |
cacttgtgtctatctctctcataaatggacaacaaat |
10631152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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