View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21577_low_9 (Length: 352)

Name: NF21577_low_9
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21577_low_9
NF21577_low_9
[»] chr4 (24 HSPs)
chr4 (1-333)||(5035059-5035391)
chr4 (2-266)||(2533820-2534081)
chr4 (9-266)||(2525262-2525516)
chr4 (9-257)||(2490641-2490889)
chr4 (11-191)||(2518812-2518992)
chr4 (35-93)||(2471733-2471791)
chr4 (40-94)||(5106632-5106686)
chr4 (35-100)||(2467212-2467277)
chr4 (40-92)||(2367981-2368033)
chr4 (137-247)||(2477091-2477201)
chr4 (41-99)||(2621482-2621540)
chr4 (40-97)||(2460279-2460336)
chr4 (33-93)||(2547221-2547281)
chr4 (40-91)||(2373547-2373598)
chr4 (42-91)||(12124524-12124573)
chr4 (36-91)||(2391333-2391388)
chr4 (44-97)||(2477256-2477309)
chr4 (40-89)||(2546825-2546874)
chr4 (52-93)||(2625589-2625630)
chr4 (49-93)||(2363162-2363206)
chr4 (41-93)||(2393911-2393963)
chr4 (217-257)||(2460107-2460147)
chr4 (156-256)||(2467029-2467129)
chr4 (156-256)||(5102520-5102620)
[»] chr8 (1 HSPs)
chr8 (47-92)||(18314718-18314763)
[»] chr5 (1 HSPs)
chr5 (48-92)||(28673354-28673398)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 5035391 - 5035059
Alignment:
Q  1 gtttaacgtctctcacttgttatcaaatgagatttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttac 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  5035391 gtttaacgtctctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatccttac 5035292  T
Q  101 tgatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035291 tgatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggt 5035192  T
Q  201 ggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgcaagatatgcgtttcgtggtcctcgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  5035191 ggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatgcgtttcgtggtcctcgtc 5035092  T
Q  301 ctcctctacaatatcaatgagcttcaagaacca 333  Q
    |||||||||||||||||||||||||||||||||    
T  5035091 ctcctctacaatatcaatgagcttcaagaacca 5035059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 2534081 - 2533820
Alignment:
Q  2 tttaacgtctctcacttgttatcaaatgagatttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttact 101  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||     
T  2534081 tttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaactcatccttacc 2533982  T
Q  102 gatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtg 201  Q
    ||  |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| |||    
T  2533981 gactctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcataatatcgtcagtg 2533882  T
Q  202 gacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt 266  Q
      ||||||||||| ||||||||||||| |||||||   ||||||||| |||||||||||||||||    
T  2533881 agcactcaattaaaaatctctgcaagaactgtgac---cttcaagagctcaaagtggttggtggt 2533820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 2525516 - 2525262
Alignment:
Q  9 tctctcacttgttatcaaatgagatttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactg 108  Q
    |||||||||||||||||| |||||||||| ||||||||||||||  |||| || ||||||||||||||| |||||||||||||||||||||| || ||||    
T  2525516 tctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaagaactcatccttaccgacactg 2525417  T
Q  109 gttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactc 208  Q
    ||||||    ||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  || |||||  |||  ||||||    
T  2525416 gttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcatactatcgcgggtcaacactc 2525317  T
Q  209 aattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt 266  Q
    | ||||||||||||||| || |||||||   |||||||||||||||||||||||||||    
T  2525316 agttaagaatctctgcaggaactgtgac---cttcaagaggtcaaagtggttggtggt 2525262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 2490889 - 2490641
Alignment:
Q  9 tctctcacttgttatcaaatgagatttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactg 108  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| || || |  |    
T  2490889 tctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccgacaacg 2490790  T
Q  109 gttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactc 208  Q
    ||  |||||| |||| ||   |||| | |||||||||||| || | ||||||||||||||||| |||||||||| ||  |||| || | |||   |||||    
T  2490789 gtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgctttatctcttaatttcattggtaatcactc 2490690  T
Q  209 aattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtg 257  Q
    | ||||  |||||||||||| |||||||||||||||||||| |||||||    
T  2490689 agttaaagatctctgcaagaactgtgaccttcttcaagaggccaaagtg 2490641  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 2518992 - 2518812
Alignment:
Q  11 tctcacttgttatcaaatgagatttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactggt 110  Q
    ||||||||||||| |||||| || |||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||   |    
T  2518992 tctcacttgttattaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgataccatt 2518893  T
Q  111 tgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaat 191  Q
    | | || || |||  |  ||||||| ||||  ||||||||| |||||||| |||||||||| |||||||||| || |||||    
T  2518892 tataccaatgatttggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgctttatcttgtaat 2518812  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 2471791 - 2471733
Alignment:
Q  35 tatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactca 93  Q
    |||| |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  2471791 tatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactca 2471733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
Q  40 acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcat 94  Q
    |||||| |||||||||||| || ||||||||||||||||||||||||||||||||    
T  5106632 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat 5106686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 2467277 - 2467212
Alignment:
Q  35 tatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttac 100  Q
    |||| ||||||| ||||| ||||| || |||||||||||||||||||||||||| |||||||||||    
T  2467277 tatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatccttac 2467212  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 2367981 - 2368033
Alignment:
Q  40 acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactc 92  Q
    |||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  2367981 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 2477201 - 2477091
Alignment:
Q  137 tgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtgac 236  Q
    |||||||||||| || ||||||||||||||||||| |||||||||| ||  |||| || | ||| |||  || ||| |  |||||||||||| ||| |||    
T  2477201 tgatgatcaattgttggcgcttcccaaactccgcaagattgctttatctcctaatttcatgggtcgacgatctattgactatctctgcaagaactgcgac 2477102  T
Q  237 cttcttcaaga 247  Q
    |||||||||||    
T  2477101 cttcttcaaga 2477091  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 2621482 - 2621540
Alignment:
Q  41 caagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatcctta 99  Q
    |||||||||||| |||||  | ||||||||||||||||||||||||||||||| |||||    
T  2621482 caagaatgatctattcttccttgctgattgtttccctttactcgaagaactcaacctta 2621540  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 2460336 - 2460279
Alignment:
Q  40 acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatcct 97  Q
    |||||||| |||||||||| || ||||||||||| || ||||||||||||||||||||    
T  2460336 acaagaatcatctcttcttaattgctgattgttttccattactcgaagaactcatcct 2460279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 2547281 - 2547221
Alignment:
Q  33 tttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactca 93  Q
    ||||||| |||||||||| | ||||| || |||||||||||||||||||| ||||||||||    
T  2547281 tttatcagcaagaatgatttattcttcattgctgattgtttccctttacttgaagaactca 2547221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 2373547 - 2373598
Alignment:
Q  40 acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaact 91  Q
    |||||| |||||||||||| || ||||||||||||||||| |||||||||||    
T  2373547 acaagagtgatctcttcttcattgctgattgtttccctttgctcgaagaact 2373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 12124573 - 12124524
Alignment:
Q  42 aagaatgatctcttcttgatcgctgattgtttccctttactcgaagaact 91  Q
    |||| |||||||||||| || |||||||||||||||||||| ||||||||    
T  12124573 aagagtgatctcttcttcattgctgattgtttccctttactagaagaact 12124524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 2391333 - 2391388
Alignment:
Q  36 atcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaact 91  Q
    ||||||||||| ||| ||||||| || | |||||| ||||||||||||||||||||    
T  2391333 atcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaact 2391388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 2477309 - 2477256
Alignment:
Q  44 gaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatcct 97  Q
    ||||||||||||||| ||  || ||||||||||||| || ||||||||||||||    
T  2477309 gaatgatctcttcttcatttctaattgtttccctttgctagaagaactcatcct 2477256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 2546874 - 2546825
Alignment:
Q  40 acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaa 89  Q
    ||||||||||| | ||||| || ||||||||||| |||||||||||||||    
T  2546874 acaagaatgatttattcttcattgctgattgttttcctttactcgaagaa 2546825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 2625589 - 2625630
Alignment:
Q  52 tcttcttgatcgctgattgtttccctttactcgaagaactca 93  Q
    ||||||| || | |||||||||||||||||||||||||||||    
T  2625589 tcttctttattgttgattgtttccctttactcgaagaactca 2625630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 2363162 - 2363206
Alignment:
Q  49 atctcttcttgatcgctgattgtttccctttactcgaagaactca 93  Q
    |||||||||| || ||||||||||||||||| ||||| |||||||    
T  2363162 atctcttcttcattgctgattgtttccctttcctcgacgaactca 2363206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 2393911 - 2393963
Alignment:
Q  41 caagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactca 93  Q
    |||||||| |||||| || || ||||||| ||||||||||||| |||||||||    
T  2393911 caagaatggtctctttttcattgctgattttttccctttactccaagaactca 2393963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 2460147 - 2460107
Alignment:
Q  217 atctctgcaagagctgtgaccttcttcaagaggtcaaagtg 257  Q
    |||| |||||||  |||||||||||||||||||||||||||    
T  2460147 atctttgcaagaattgtgaccttcttcaagaggtcaaagtg 2460107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 2467129 - 2467029
Alignment:
Q  156 cttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaag 255  Q
    ||||| |||||||||| |||||||||| || ||||| |  | ||| | || || |||||  ||||||||| || ||||| |||||||||||| |||||||    
T  2467129 cttccaaaactccgcaagattgctttatctcgtaattttattggttgccaatctattaactatctctgcaggaactgtggccttcttcaagacgtcaaag 2467030  T
Q  256 t 256  Q
    |    
T  2467029 t 2467029  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 5102520 - 5102620
Alignment:
Q  156 cttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaag 255  Q
    |||||||||||||||| ||||| |||| || ||||| || | |||   || || |||||  |||| |||| || |||||||||||||||||| |||||||    
T  5102520 cttcccaaactccgcaagattgttttatctcgtaatttcataggtacccaatctattaaccatctttgcaggaactgtgaccttcttcaagatgtcaaag 5102619  T
Q  256 t 256  Q
    |    
T  5102620 t 5102620  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 18314718 - 18314763
Alignment:
Q  47 tgatctcttcttgatcgctgattgtttccctttactcgaagaactc 92  Q
    |||||||||| | || ||||||||||||||||| ||||||||||||    
T  18314718 tgatctcttcctcattgctgattgtttccctttgctcgaagaactc 18314763  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 28673354 - 28673398
Alignment:
Q  48 gatctcttcttgatcgctgattgtttccctttactcgaagaactc 92  Q
    ||||||||||| || |||||||| |||||||| ||||||||||||    
T  28673354 gatctcttcttcattgctgattgcttccctttgctcgaagaactc 28673398  T

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