View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21578_high_1 (Length: 680)
Name: NF21578_high_1
Description: NF21578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21578_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 89 - 657
Target Start/End: Original strand, 44826365 - 44826918
Alignment:
| Q |
89 |
ccacaaaataatagaagaaccctataatgttaaacaataaagagggtttgaaaatcaaacaaaacacgaacaaagccccctttaccagataataaaataa |
188 |
Q |
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| T |
44826365 |
ccacaaaataatagaagaaccctataatgttaaacaataaagagggtttgaaaatcattcaaaacacgaacaaagccccctttaccagata--------- |
44826455 |
T |
|
| Q |
189 |
tacatataggaaaaatgaaatcaatttaaaattaaagacattacctaacccaacaatttcgacatacatcagggtcacaatctcttgaagctgcaaaaca |
288 |
Q |
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| T |
44826456 |
------taggaaaaatgaaatcaatttaaaattaaagacattacctaacccaacaatttcgacatacatcagggtcacaatctcttgaagctgcaaaaca |
44826549 |
T |
|
| Q |
289 |
tggacagtgtcgacttctacactgactcttagtacactgacatcctccaaatagatttttacagagctttgaacacctgaaggtagaaaatataactgat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44826550 |
tggacagtgtcgacttctacactgactcttagtacactgacatcctccaaatcgatttttacagagctttgaacacctgaaggtaaaaaatataactgat |
44826649 |
T |
|
| Q |
389 |
cacattgaaaacatagttgttttccatcgaaaagtaacataattaaatgaaaattgacatacccacaatatttttcacagcaataaccattaagacgaca |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44826650 |
cacattgaaaacatagttgttttccatcgaaaagtaacataattaaatgaaaattgacatacccacaatatttttcacagcaaaaaccattaagacgaca |
44826749 |
T |
|
| Q |
489 |
tgtacattgctttccacacgccccctcacattcacaaggtgtatagtgcttttccagtttgtttttctcatcggtatttcttcttcttttccatttggat |
588 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44826750 |
tggacattgctttccacacgccccctcacattcacaaggtgtatagtgcttttccagtttgtttttctcatcggtatttcttcttcttttccatttggat |
44826849 |
T |
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| Q |
589 |
ggaagtccacaagattttgaagaatatttgaacttcttagatttgctctttcttgacatcgaccttgac |
657 |
Q |
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| T |
44826850 |
ggaagtccacaagattttgaagaatatttgaacttcttagatttgctctttcttgacatcgaccttgac |
44826918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 38938813 - 38938721
Alignment:
| Q |
226 |
acattacctaacccaacaatttcgacatacatcagggtcacaatctcttgaagctgcaaaacatggacagtgtcgacttctacactgactctt |
318 |
Q |
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||||||||||||||||||||||||||| ||||| || ||||| || | | ||| ||||||||||| || |||||||||||||| |||||||| |
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| T |
38938813 |
acattacctaacccaacaatttcgacagacatctggatcacattcacgtccagcagcaaaacatgggcattgtcgacttctacattgactctt |
38938721 |
T |
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