View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21578_high_5 (Length: 306)

Name: NF21578_high_5
Description: NF21578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21578_high_5
NF21578_high_5
[»] chr2 (21 HSPs)
chr2 (33-288)||(44624766-44625021)
chr2 (76-280)||(44615398-44615605)
chr2 (65-282)||(39153049-39153266)
chr2 (89-282)||(39138636-39138826)
chr2 (65-272)||(39216657-39216864)
chr2 (92-274)||(39371115-39371297)
chr2 (65-286)||(39396627-39396848)
chr2 (65-280)||(39196485-39196700)
chr2 (97-283)||(44895114-44895300)
chr2 (65-273)||(39387469-39387677)
chr2 (92-286)||(39380496-39380690)
chr2 (90-277)||(39205742-39205929)
chr2 (65-281)||(39421161-39421374)
chr2 (89-235)||(39472763-39472909)
chr2 (65-250)||(39413004-39413186)
chr2 (90-264)||(39223719-39223893)
chr2 (74-263)||(39188738-39188927)
chr2 (75-275)||(39099584-39099784)
chr2 (90-216)||(39478294-39478420)
chr2 (78-264)||(39604324-39604510)
chr2 (183-275)||(39493532-39493624)
[»] chr5 (2 HSPs)
chr5 (64-288)||(17060630-17060854)
chr5 (65-280)||(33562281-33562496)
[»] chr8 (3 HSPs)
chr8 (89-233)||(44730154-44730298)
chr8 (67-281)||(45342956-45343170)
chr8 (64-232)||(44949869-44950037)
[»] chr7 (1 HSPs)
chr7 (89-275)||(19808900-19809083)
[»] scaffold0283 (1 HSPs)
scaffold0283 (64-232)||(5849-6017)
[»] chr6 (1 HSPs)
chr6 (162-281)||(16114358-16114477)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 33 - 288
Target Start/End: Complemental strand, 44625021 - 44624766
Alignment:
Q  33 gtctcaaacagttcttcagccatcttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgaca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  44625021 gtctcaaacagttcttcagccatcttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgaca 44624922  T
Q  133 aaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624921 aaatcaatagaaatccgagaacctccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 44624822  T
Q  233 aggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggcttt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624821 aggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggcttt 44624766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 76 - 280
Target Start/End: Complemental strand, 44615605 - 44615398
Alignment:
Q  76 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 175  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  176 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtt---taatatttggtgagattgtcatcagtttttctagc 272  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||   ||||||||||||||||| ||||||||| |||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagc 44615406  T
Q  273 agatagat 280  Q
    ||||||||    
T  44615405 agatagat 44615398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 65 - 282
Target Start/End: Complemental strand, 39153266 - 39153049
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| |||||||||||||||||||| || ||||||||| |||||||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatcagtt 39153067  T
Q  265 tttctagcagatagatgc 282  Q
     |||||||||| ||||||    
T  39153066 gttctagcagaaagatgc 39153049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 89 - 282
Target Start/End: Complemental strand, 39138826 - 39138636
Alignment:
Q  89 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 188  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  189 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgc 282  Q
    |||||||  | | | ||||||||||||||||| |||||||||  ||||||||| || ||||||||| ||||||||| |||||||||| ||||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatcagttgttctagcagaaagatgc 39138636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 65 - 272
Target Start/End: Complemental strand, 39216864 - 39216657
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagtt 39216665  T
Q  265 tttctagc 272  Q
     |||||||    
T  39216664 gttctagc 39216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 274
Target Start/End: Complemental strand, 39371297 - 39371115
Alignment:
Q  92 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 191  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  192 ttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcag 274  Q
    ||||  ||| | |||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||| |||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttctagcag 39371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 65 - 286
Target Start/End: Original strand, 39396627 - 39396848
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| ||||||||||||||| ||||| ||||||||||| |||||||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagtt 39396826  T
Q  265 tttctagcagatagatgcggct 286  Q
     ||||||||  |||||| ||||    
T  39396827 cttctagcacgtagatgtggct 39396848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 65 - 280
Target Start/End: Original strand, 39196485 - 39196700
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    ||||||||||| || ||||||||||||||||| |||   ||||||||||||||||| | ||| |||||||||||||||| |||||||||| |||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagtt 39196684  T
Q  265 tttctagcagatagat 280  Q
     ||| |||||||||||    
T  39196685 gttccagcagatagat 39196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 44895114 - 44895300
Alignment:
Q  97 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 196  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  197 ctcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcg 283  Q
     | | | ||||||||||||||||  |||||||||| |||||||||| ||||||| |||  ||||||| |||||||||||||||||||    
T  44895214 tttatgtgctagcttcaatgcttgttctcttacacgaggtttaataattggtgacattcccatcagtgtttctagcagatagatgcg 44895300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 65 - 273
Target Start/End: Original strand, 39387469 - 39387677
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | | ||||||||| || ||| ||||||||| || |||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagtt 39387668  T
Q  265 tttctagca 273  Q
     ||||||||    
T  39387669 gttctagca 39387677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 286
Target Start/End: Original strand, 39380496 - 39380690
Alignment:
Q  92 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 191  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  192 ttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggct 286  Q
    ||||| ||| | |||||| ||| |||||| ||||||||||||  || |||||| ||||||| | ||||||||| |||||||||| ||||||||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgagactctcatcagttgttctagcagaaagatgcggct 39380690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 277
Target Start/End: Original strand, 39205742 - 39205929
Alignment:
Q  90 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 189  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  190 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagata 277  Q
    ||||||| |||   ||||||||||||||||  ||||| |||||||||| ||||  |||||||||| ||||||||| ||| ||||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattctcatcagttgttcaagcagata 39205929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 281
Target Start/End: Original strand, 39421161 - 39421374
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    |||||||||||||||| ||| ||||||||||| ||| | || |||||||||||||| ||| ||||||||| |||||||| |||||||||| |||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagtt 39421357  T
Q  265 tttctagcagatagatg 281  Q
     |||||||||| |||||    
T  39421358 gttctagcagaaagatg 39421374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 39472763 - 39472909
Alignment:
Q  89 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 188  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  189 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaagg 235  Q
     ||||||| ||| | || ||||||||||| || | | ||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgcgtctttttttacacaagg 39472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 250
Target Start/End: Original strand, 39413004 - 39413186
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtga 250  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||   ||| |||||||||||||  ||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgct---tcttttacacaaggtttgttatttggtga 39413186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 264
Target Start/End: Complemental strand, 39223893 - 39223719
Alignment:
Q  90 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 189  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  190 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    |||| || |||   ||||||||||||||||  |||||  ||||||||| ||||| |||||||||| |||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagtt 39223719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 263
Target Start/End: Original strand, 39188738 - 39188927
Alignment:
Q  74 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 173  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  174 ttttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagt 263  Q
    |||||||||||||||||||| || ||| | ||||| |||| ||| || |||||||||  ||||||||| |  ||||||||| ||||||||    
T  39188838 ttttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctcttacatgaggtttaatgtcaggtgagattctcatcagt 39188927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 275
Target Start/End: Complemental strand, 39099784 - 39099584
Alignment:
Q  75 ccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtat 174  Q
    |||||||||||||  |||||||||||||||||| ||| |  ||||  |||||| |||| ||  | |||||| || |||||| |||  ||||||||||||     
T  39099784 ccaaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtag 39099685  T
Q  175 tttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcag 274  Q
    ||||  | ||   || |||||||| | | || |||||||  ||||| ||||||||||||||||| |||| |||||||||| ||||||||| ||| |||||    
T  39099684 tttcacttataaaagatttcaacttaagtgccagcttcatcgcttcttctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcag 39099585  T
Q  275 a 275  Q
    |    
T  39099584 a 39099584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  90 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 189  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  190 ctttcaactcacgcgctagcttcaatg 216  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 264
Target Start/End: Complemental strand, 39604510 - 39604324
Alignment:
Q  78 aaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatttt 177  Q
    ||||||||||  |||||||||||||| ||| ||| |  |||||||||||| |||| ||  | |||||| || |||||  |||   ||||||| |||||||    
T  39604510 aaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtatttt 39604411  T
Q  178 ctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
    |  | ||||||| |||||| | | | |||||||||| |||||| |||||||||| ||||||||||| ||||  |||| |||||||||    
T  39604410 cacttatgttagatttcaaattaagtgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagtt 39604324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 39493532 - 39493624
Alignment:
Q  183 atgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcaga 275  Q
    |||||||||||||  ||| | |||||||||| |||||| ||| |||||  |||| |||||| |||||||||| || |||||| ||| ||||||    
T  39493532 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 39493624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 64 - 288
Target Start/End: Complemental strand, 17060854 - 17060630
Alignment:
Q  64 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 163  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  164 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagt 263  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| ||||| ||| ||||||||| ||||||||||||||| ||| ||||||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttggtgacattatcatcagt 17060655  T
Q  264 ttttctagcagatagatgcggcttt 288  Q
    | |||||||| | ||||||||||||    
T  17060654 tgttctagcataaagatgcggcttt 17060630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 65 - 280
Target Start/End: Complemental strand, 33562496 - 33562281
Alignment:
Q  65 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 164  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  165 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 264  Q
      |||||||||||||||||||||||||||||| |||   ||||||||||||||||| | ||| |||||||||| ||||| |||||||||| |||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagtt 33562297  T
Q  265 tttctagcagatagat 280  Q
     ||| || ||||||||    
T  33562296 gttccagaagatagat 33562281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 44730298 - 44730154
Alignment:
Q  89 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 188  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  189 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaa 233  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 67 - 281
Target Start/End: Complemental strand, 45343170 - 45342956
Alignment:
Q  67 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 166  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  167 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttt 266  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| ||||  ||||| ||||||||| |    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgt 45342971  T
Q  267 tctagcagatagatg 281  Q
    ||||| |||||||||    
T  45342970 tctaggagatagatg 45342956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 44949869 - 44950037
Alignment:
Q  64 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 163  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  164 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 232  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||| |||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 44950037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 19809083 - 19808900
Alignment:
Q  89 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 188  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |||   ||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtacttt---tcatgtta 19808987  T
Q  189 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcaga 275  Q
    |||||||| ||| | ||||||||||||| ||| |||||||||| ||||||||| || ||||||||| ||||||||| ||||||||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattctcatcagttgttctagcaga 19808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 5849 - 6017
Alignment:
Q  64 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 163  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  164 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 232  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||| |||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 6017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 16114477 - 16114358
Alignment:
Q  162 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatca 261  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||  |||||||||| |||||||||| ||||||| ||| ||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagttggtgatattctcatca 16114378  T
Q  262 gtttttctagcagatagatg 281  Q
    ||| ||||| ||||||||||    
T  16114377 gttcttctaacagatagatg 16114358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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