View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21578_low_3 (Length: 588)

Name: NF21578_low_3
Description: NF21578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21578_low_3
NF21578_low_3
[»] chr2 (36 HSPs)
chr2 (29-570)||(44624766-44625307)
chr2 (358-562)||(44615398-44615605)
chr2 (347-564)||(39153049-39153266)
chr2 (371-564)||(39138636-39138826)
chr2 (347-554)||(39216657-39216864)
chr2 (374-556)||(39371115-39371297)
chr2 (347-568)||(39396627-39396848)
chr2 (101-211)||(44748549-44748659)
chr2 (347-562)||(39196485-39196700)
chr2 (379-565)||(44895114-44895300)
chr2 (347-555)||(39387469-39387677)
chr2 (374-568)||(39380496-39380690)
chr2 (372-559)||(39205742-39205929)
chr2 (347-563)||(39421161-39421374)
chr2 (371-517)||(39472763-39472909)
chr2 (347-532)||(39413004-39413186)
chr2 (50-195)||(44749177-44749314)
chr2 (372-546)||(39223719-39223893)
chr2 (91-205)||(44615921-44616034)
chr2 (356-545)||(39188738-39188927)
chr2 (357-557)||(39099584-39099784)
chr2 (372-498)||(39478294-39478420)
chr2 (360-546)||(39604324-39604510)
chr2 (156-211)||(2363528-2363583)
chr2 (164-213)||(39471516-39471565)
chr2 (210-262)||(44749485-44749538)
chr2 (153-209)||(39131267-39131323)
chr2 (153-191)||(39379560-39379598)
chr2 (135-211)||(39419835-39419911)
chr2 (465-557)||(39493532-39493624)
chr2 (158-193)||(39372205-39372240)
chr2 (154-205)||(39493082-39493133)
chr2 (155-213)||(39179696-39179753)
chr2 (156-213)||(39139976-39140033)
chr2 (156-209)||(39503146-39503199)
chr2 (153-193)||(39125284-39125324)
[»] chr5 (4 HSPs)
chr5 (346-570)||(17060630-17060854)
chr5 (347-562)||(33562281-33562496)
chr5 (137-210)||(17061211-17061284)
chr5 (155-213)||(33563363-33563420)
[»] chr8 (6 HSPs)
chr8 (371-515)||(44730154-44730298)
chr8 (349-563)||(45342956-45343170)
chr8 (346-514)||(44949869-44950037)
chr8 (169-211)||(44947455-44947497)
chr8 (205-246)||(44949676-44949717)
chr8 (218-246)||(44730652-44730680)
[»] chr7 (1 HSPs)
chr7 (371-557)||(19808900-19809083)
[»] scaffold0283 (3 HSPs)
scaffold0283 (346-514)||(5849-6017)
scaffold0283 (169-211)||(3434-3476)
scaffold0283 (205-246)||(5656-5697)
[»] chr6 (1 HSPs)
chr6 (444-563)||(16114358-16114477)


Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 29 - 570
Target Start/End: Complemental strand, 44625307 - 44624766
Alignment:
Q  29 aatatagtggtctaatcctatttagcaggtttccactagtacaccacatttctttacattacatttttcaactgcaaaaacttgttcattcttctcaacc 128  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625307 aatatagtagtctaatcctatttagcaggtttccactagtacatcacatttctttacattacatttttcaactgcaaaaacttgttcattcttctcaacc 44625208  T
Q  129 aagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacatgattagatacaaaat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625207 aagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacatgattagatacaaaat 44625108  T
Q  229 tgcaatatggatttgatattgtatgatgtaacataacaatgcatagagacatacaataaatttaattagcaaaaccaatatggaggctctcaaccagttc 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  44625107 tgcaatatggatttgatattgaatgatgtaacataacaatgcatagagacataccataaatttaattagcaaaaccaatatggagggtctcaaacagttc 44625008  T
Q  329 ttcagccatcttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaat 428  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625007 ttcagccatcttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaat 44624908  T
Q  429 ccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttg 528  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624907 ccgagaacctccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttg 44624808  T
Q  529 gtgagattgtcatcagtttttctagcagatagatgcggcttt 570  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44624807 gtgagattgtcatcagtttttctagcagatagatgcggcttt 44624766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 358 - 562
Target Start/End: Complemental strand, 44615605 - 44615398
Alignment:
Q  358 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 457  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  458 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtt---taatatttggtgagattgtcatcagtttttctagc 554  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||   ||||||||||||||||| ||||||||| |||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagc 44615406  T
Q  555 agatagat 562  Q
    ||||||||    
T  44615405 agatagat 44615398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 347 - 564
Target Start/End: Complemental strand, 39153266 - 39153049
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| |||||||||||||||||||| || ||||||||| |||||||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatcagtt 39153067  T
Q  547 tttctagcagatagatgc 564  Q
     |||||||||| ||||||    
T  39153066 gttctagcagaaagatgc 39153049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 371 - 564
Target Start/End: Complemental strand, 39138826 - 39138636
Alignment:
Q  371 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 470  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  471 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgc 564  Q
    |||||||  | | | ||||||||||||||||| |||||||||  ||||||||| || ||||||||| ||||||||| |||||||||| ||||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatcagttgttctagcagaaagatgc 39138636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 347 - 554
Target Start/End: Complemental strand, 39216864 - 39216657
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagtt 39216665  T
Q  547 tttctagc 554  Q
     |||||||    
T  39216664 gttctagc 39216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 374 - 556
Target Start/End: Complemental strand, 39371297 - 39371115
Alignment:
Q  374 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 473  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  474 ttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcag 556  Q
    ||||  ||| | |||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||| |||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttctagcag 39371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 347 - 568
Target Start/End: Original strand, 39396627 - 39396848
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| ||||||||||||||| ||||| ||||||||||| |||||||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagtt 39396826  T
Q  547 tttctagcagatagatgcggct 568  Q
     ||||||||  |||||| ||||    
T  39396827 cttctagcacgtagatgtggct 39396848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 44748659 - 44748549
Alignment:
Q  101 tgcaaaaacttgttcattcttctcaaccaagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcac 200  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44748659 tgcaaaaacttgttgattcttcccaatcaagtaactgaatcaaatttcttcatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcac 44748560  T
Q  201 ttcatcaaaac 211  Q
    ||||| |||||    
T  44748559 ttcataaaaac 44748549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 347 - 562
Target Start/End: Original strand, 39196485 - 39196700
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    ||||||||||| || ||||||||||||||||| |||   ||||||||||||||||| | ||| |||||||||||||||| |||||||||| |||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagtt 39196684  T
Q  547 tttctagcagatagat 562  Q
     ||| |||||||||||    
T  39196685 gttccagcagatagat 39196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 379 - 565
Target Start/End: Original strand, 44895114 - 44895300
Alignment:
Q  379 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 478  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  479 ctcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcg 565  Q
     | | | ||||||||||||||||  |||||||||| |||||||||| ||||||| |||  ||||||| |||||||||||||||||||    
T  44895214 tttatgtgctagcttcaatgcttgttctcttacacgaggtttaataattggtgacattcccatcagtgtttctagcagatagatgcg 44895300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 347 - 555
Target Start/End: Original strand, 39387469 - 39387677
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | | ||||||||| || ||| ||||||||| || |||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagtt 39387668  T
Q  547 tttctagca 555  Q
     ||||||||    
T  39387669 gttctagca 39387677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 374 - 568
Target Start/End: Original strand, 39380496 - 39380690
Alignment:
Q  374 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 473  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  474 ttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggct 568  Q
    ||||| ||| | |||||| ||| |||||| ||||||||||||  || |||||| ||||||| | ||||||||| |||||||||| ||||||||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgagactctcatcagttgttctagcagaaagatgcggct 39380690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 372 - 559
Target Start/End: Original strand, 39205742 - 39205929
Alignment:
Q  372 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 471  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  472 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagata 559  Q
    ||||||| |||   ||||||||||||||||  ||||| |||||||||| ||||  |||||||||| ||||||||| ||| ||||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattctcatcagttgttcaagcagata 39205929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 347 - 563
Target Start/End: Original strand, 39421161 - 39421374
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    |||||||||||||||| ||| ||||||||||| ||| | || |||||||||||||| ||| ||||||||| |||||||| |||||||||| |||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagtt 39421357  T
Q  547 tttctagcagatagatg 563  Q
     |||||||||| |||||    
T  39421358 gttctagcagaaagatg 39421374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 371 - 517
Target Start/End: Original strand, 39472763 - 39472909
Alignment:
Q  371 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 470  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  471 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaagg 517  Q
     ||||||| ||| | || ||||||||||| || | | ||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgcgtctttttttacacaagg 39472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 347 - 532
Target Start/End: Original strand, 39413004 - 39413186
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtga 532  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||   ||| |||||||||||||  ||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgct---tcttttacacaaggtttgttatttggtga 39413186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 44749177 - 44749314
Alignment:
Q  50 ttagcaggtttccactagtacaccacatttctttacattacatttttcaactgcaaaaacttgttcattcttctcaaccaagtaactgaatcaaatttct 149  Q
    |||||||||||||||||   ||||||||||||||    || ||||| | | ||||||| |||||| |||||||||| ||||||||||||||||| |||||    
T  44749177 ttagcaggtttccacta---caccacatttcttt----tagattttcctagtgcaaaatcttgttgattcttctcagccaagtaactgaatcaa-tttct 44749268  T
Q  150 ccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaa 195  Q
     ||||||||||| |||||||| |||||||| ||||||||| |||||    
T  44749269 tcatcttgataacattctcaataaaatctgaaaggtgtaaaaaaaa 44749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 372 - 546
Target Start/End: Complemental strand, 39223893 - 39223719
Alignment:
Q  372 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 471  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  472 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    |||| || |||   ||||||||||||||||  |||||  ||||||||| ||||| |||||||||| |||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagtt 39223719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 44616034 - 44615921
Alignment:
Q  91 atttttcaactgcaaaaacttgttcattcttctcaaccaagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaag 190  Q
    ||||||| | |||| ||||||||| || ||||||  |||| |||||||||||||||||| ||||||||  |  |||||||||||||||||||||||||||    
T  44616034 atttttctagtgcagaaacttgttgatccttctcggccaattaactgaatcaaatttcttcatcttgaatat-ttctcaacaaaatctgcaaggtgtaag 44615936  T
Q  191 aaaaattcacttcat 205  Q
    |||||||||| ||||    
T  44615935 aaaaattcacatcat 44615921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 545
Target Start/End: Original strand, 39188738 - 39188927
Alignment:
Q  356 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 455  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  456 ttttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagt 545  Q
    |||||||||||||||||||| || ||| | ||||| |||| ||| || |||||||||  ||||||||| |  ||||||||| ||||||||    
T  39188838 ttttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctcttacatgaggtttaatgtcaggtgagattctcatcagt 39188927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 357 - 557
Target Start/End: Complemental strand, 39099784 - 39099584
Alignment:
Q  357 ccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtat 456  Q
    |||||||||||||  |||||||||||||||||| ||| |  ||||  |||||| |||| ||  | |||||| || |||||| |||  ||||||||||||     
T  39099784 ccaaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtag 39099685  T
Q  457 tttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcag 556  Q
    ||||  | ||   || |||||||| | | || |||||||  ||||| ||||||||||||||||| |||| |||||||||| ||||||||| ||| |||||    
T  39099684 tttcacttataaaagatttcaacttaagtgccagcttcatcgcttcttctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcag 39099585  T
Q  557 a 557  Q
    |    
T  39099584 a 39099584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 498
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  372 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 471  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  472 ctttcaactcacgcgctagcttcaatg 498  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 546
Target Start/End: Complemental strand, 39604510 - 39604324
Alignment:
Q  360 aaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatttt 459  Q
    ||||||||||  |||||||||||||| ||| ||| |  |||||||||||| |||| ||  | |||||| || |||||  |||   ||||||| |||||||    
T  39604510 aaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtatttt 39604411  T
Q  460 ctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
    |  | ||||||| |||||| | | | |||||||||| |||||| |||||||||| ||||||||||| ||||  |||| |||||||||    
T  39604410 cacttatgttagatttcaaattaagtgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagtt 39604324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 2363583 - 2363528
Alignment:
Q  156 tgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 211  Q
    |||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||    
T  2363583 tgataagattctgaacaaaatctgcaaggtgcaggaaaatttcacttcatcaaaac 2363528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 39471516 - 39471565
Alignment:
Q  164 ttctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 213  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||||    
T  39471516 ttctcaacaaaatctgcaaggtacaaaaaaaattcacttcatcaaaacat 39471565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 44749485 - 44749538
Alignment:
Q  210 acatgattagatacaaaattgcaatatggatttgat-attgtatgatgtaacat 262  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  44749485 acatgattagatacaaaattggaatatggatttgataattatatgatgtaacat 44749538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 39131323 - 39131267
Alignment:
Q  153 tcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaa 209  Q
    |||||| ||||||||| ||||||||||||||||||||||||| || ||| |||||||    
T  39131323 tcttgaaaagattctcgacaaaatctgcaaggtgtaagaaaatttaactccatcaaa 39131267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 39379560 - 39379598
Alignment:
Q  153 tcttgataagattctcaacaaaatctgcaaggtgtaaga 191  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  39379560 tcttgataagattctcaacaaaatctgcaaggtgcaaga 39379598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 39419835 - 39419911
Alignment:
Q  135 ctgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 211  Q
    |||||||||||| || | || | ||||||||||||||||||||||| ||||  || ||||||| | |||||||||||    
T  39419835 ctgaatcaaattgcttcctccttataagattctcaacaaaatctgcgaggtccaaaaaaaattaatttcatcaaaac 39419911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 557
Target Start/End: Original strand, 39493532 - 39493624
Alignment:
Q  465 atgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcaga 557  Q
    |||||||||||||  ||| | |||||||||| |||||| ||| |||||  |||| |||||| |||||||||| || |||||| ||| ||||||    
T  39493532 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 39493624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 39372240 - 39372205
Alignment:
Q  158 ataagattctcaacaaaatctgcaaggtgtaagaaa 193  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39372240 ataagattctcaacaaaatctgcaaggtgcaagaaa 39372205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 39493082 - 39493133
Alignment:
Q  154 cttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcat 205  Q
    ||||||||||||||  |||||| |||||||||||||||||| | ||||||||    
T  39493082 cttgataagattcttgacaaaacctgcaaggtgtaagaaaattccacttcat 39493133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 39179753 - 39179696
Alignment:
Q  155 ttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 213  Q
    |||||||||| || ||||||||||||||| || ||| ||| ||||||||||||||||||    
T  39179753 ttgataagatgcttaacaaaatctgcaagatgcaag-aaatttcacttcatcaaaacat 39179696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 39140033 - 39139976
Alignment:
Q  156 tgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 213  Q
    |||||||||  |||||||| |||| |||||  ||||||| ||||||||||||||||||    
T  39140033 tgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacat 39139976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 39503146 - 39503199
Alignment:
Q  156 tgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaa 209  Q
    ||||||| |||| |||||||||||||||||  || |||| ||||||||||||||    
T  39503146 tgataagtttctgaacaaaatctgcaaggtacaacaaaatttcacttcatcaaa 39503199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 39125324 - 39125284
Alignment:
Q  153 tcttgataagattctcaacaaaatctgcaaggtgtaagaaa 193  Q
    |||||||||||||||| |||||| ||||||||| |||||||    
T  39125324 tcttgataagattctcgacaaaaactgcaaggtttaagaaa 39125284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 346 - 570
Target Start/End: Complemental strand, 17060854 - 17060630
Alignment:
Q  346 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 445  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  446 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagt 545  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| ||||| ||| ||||||||| ||||||||||||||| ||| ||||||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttggtgacattatcatcagt 17060655  T
Q  546 ttttctagcagatagatgcggcttt 570  Q
    | |||||||| | ||||||||||||    
T  17060654 tgttctagcataaagatgcggcttt 17060630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 347 - 562
Target Start/End: Complemental strand, 33562496 - 33562281
Alignment:
Q  347 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 446  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  447 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 546  Q
      |||||||||||||||||||||||||||||| |||   ||||||||||||||||| | ||| |||||||||| ||||| |||||||||| |||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagtt 33562297  T
Q  547 tttctagcagatagat 562  Q
     ||| || ||||||||    
T  33562296 gttccagaagatagat 33562281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 17061284 - 17061211
Alignment:
Q  137 gaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaa 210  Q
    |||||||||| || | |||||||||||||||||||||||||||||| |  ||| |||| |||||||||||||||    
T  17061284 gaatcaaattccttcctcttgataagattctcaacaaaatctgcaatggataacaaaatttcacttcatcaaaa 17061211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 33563420 - 33563363
Alignment:
Q  155 ttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 213  Q
    |||||||||| || ||||||||||||||| || ||| ||| ||||||||||||||||||    
T  33563420 ttgataagatgcttaacaaaatctgcaagatgcaag-aaatttcacttcatcaaaacat 33563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 44730298 - 44730154
Alignment:
Q  371 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 470  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  471 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaa 515  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 563
Target Start/End: Complemental strand, 45343170 - 45342956
Alignment:
Q  349 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 448  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  449 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttt 548  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| ||||  ||||| ||||||||| |    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgt 45342971  T
Q  549 tctagcagatagatg 563  Q
    ||||| |||||||||    
T  45342970 tctaggagatagatg 45342956  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 346 - 514
Target Start/End: Original strand, 44949869 - 44950037
Alignment:
Q  346 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 445  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  446 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 514  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||| |||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 44950037  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 44947455 - 44947497
Alignment:
Q  169 aacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  44947455 aacaaaatctgcaaggtgtaagaaaaattcacttgatcaaaac 44947497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 44949676 - 44949717
Alignment:
Q  205 tcaaaacatgattagatacaaaattgcaatatggatttgata 246  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  44949676 tcaagacatgattagatacaaaattgcaatatggatttgata 44949717  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 44730680 - 44730652
Alignment:
Q  218 agatacaaaattgcaatatggatttgata 246  Q
    |||||||||||||||||||||||||||||    
T  44730680 agatacaaaattgcaatatggatttgata 44730652  T

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Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 557
Target Start/End: Complemental strand, 19809083 - 19808900
Alignment:
Q  371 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 470  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |||   ||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtacttt---tcatgtta 19808987  T
Q  471 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcaga 557  Q
    |||||||| ||| | ||||||||||||| ||| |||||||||| ||||||||| || ||||||||| ||||||||| ||||||||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattctcatcagttgttctagcaga 19808900  T

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Target: scaffold0283 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 346 - 514
Target Start/End: Original strand, 5849 - 6017
Alignment:
Q  346 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 445  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  446 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 514  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||| |||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 6017  T

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Target: scaffold0283; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 3434 - 3476
Alignment:
Q  169 aacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  3434 aacaaaatctgcaaggtgtaagaaaaattcacttgatcaaaac 3476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 5656 - 5697
Alignment:
Q  205 tcaaaacatgattagatacaaaattgcaatatggatttgata 246  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  5656 tcaagacatgattagatacaaaattgcaatatggatttgata 5697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 563
Target Start/End: Complemental strand, 16114477 - 16114358
Alignment:
Q  444 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatca 543  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||  |||||||||| |||||||||| ||||||| ||| ||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagttggtgatattctcatca 16114378  T
Q  544 gtttttctagcagatagatg 563  Q
    ||| ||||| ||||||||||    
T  16114377 gttcttctaacagatagatg 16114358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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