View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21578_low_5 (Length: 347)
Name: NF21578_low_5
Description: NF21578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21578_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 38655720 - 38656032
Alignment:
| Q |
17 |
ttacaaactgcacatcaattacaaatgtgtaaataataaatagttttacattatcaatcaattataaatatcatatcattnnnnnnngttattttgaaga |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38655720 |
ttacaaactgcatatcaattacaaatgtgtaaataataaatagttttacattatcaatcaattataaatatcatatcattaaaaaaagttattttgaaga |
38655819 |
T |
|
| Q |
117 |
gttgaaattaagaacttcattagtcctctttgagccgacaactgacccttttccctttgaacggaatagtaacaattaccgtcaatatttgttcttgnnn |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38655820 |
gttgaaattaaaaacttcattagtcctctttgagccgacaactgacccttttccctttgaatggaatagtaacaattaccgtcaatatttgttcttgaaa |
38655919 |
T |
|
| Q |
217 |
nnnngatgcatacacgatgataagatatgttacttctatttgttgccattgtttgaagtaatttctttctcgattttggtcaacgatcgacctcaaacat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
38655920 |
aaaagatgcatacacgatgataagatatgttacttctatttgttgccattgtttgaagtaatttctttttcgattttggtcaacgattgacctcaaacat |
38656019 |
T |
|
| Q |
317 |
acgcggttataca |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38656020 |
acgcggttataca |
38656032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University