View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21578_low_8 (Length: 228)
Name: NF21578_low_8
Description: NF21578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21578_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 29364027 - 29364121
Alignment:
| Q |
119 |
atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcttcaaca |
213 |
Q |
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| T |
29364027 |
atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcatcaaca |
29364121 |
T |
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Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 29362787 - 29362871
Alignment:
| Q |
1 |
tgctgcaaatatacagaaaagcatagtattctatacataaatatgttgcaggcacatgaacatagagttattgtccattaaccac |
85 |
Q |
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| T |
29362787 |
tgctgcaaatatacagaaaagcatagtattctatacataaatatgttctaggcacatgaacatagagttattgtccattaaccac |
29362871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24270243 - 24270287
Alignment:
| Q |
1 |
tgctgcaaatatacagaaaagcatagtattctatacataaatatg |
45 |
Q |
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| T |
24270243 |
tgctgcaaatatatagaaaagcatagtattctatacataaatatg |
24270287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 29362910 - 29362951
Alignment:
| Q |
85 |
caactcatagaactaagagattcgttattactgaatcatcaa |
126 |
Q |
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| T |
29362910 |
caactcatagaacttagagattcgttattactgaatcatcaa |
29362951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 29915476 - 29915444
Alignment:
| Q |
42 |
tatgttgcaggcacatgaacatagagttattgt |
74 |
Q |
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| T |
29915476 |
tatgttacaggcacatgaacatagagttattgt |
29915444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 27753890 - 27753946
Alignment:
| Q |
18 |
aaagcatagtattctatacataaatatgttgcaggcacatgaacatagagttattgt |
74 |
Q |
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| T |
27753890 |
aaagaatagtattctatacataaatatgttgtaggcacatgaacatagagttattgt |
27753946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 27754121 - 27754192
Alignment:
| Q |
97 |
ctaagagattcgttattactgaatcatc------aaaacaaaaagaattcaactttttctctcttatttccg |
162 |
Q |
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| T |
27754121 |
ctaagagattcattattattgaatcatcgaaacaaaaacaaaaagaattcaactttttctctcttatttccg |
27754192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 29358703 - 29358638
Alignment:
| Q |
126 |
aaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattg |
191 |
Q |
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| T |
29358703 |
aaacaaaaagaattcaactttctctctcctttttccaaaaaactaaactttctctctcaacaattg |
29358638 |
T |
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