View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21579_high_6 (Length: 253)

Name: NF21579_high_6
Description: NF21579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21579_high_6
NF21579_high_6
[»] chr2 (2 HSPs)
chr2 (76-253)||(1292590-1292767)
chr2 (13-75)||(1292431-1292493)
[»] scaffold0119 (6 HSPs)
scaffold0119 (139-236)||(13840-13937)
scaffold0119 (139-236)||(19520-19617)
scaffold0119 (76-154)||(14080-14158)
scaffold0119 (76-154)||(19760-19838)
scaffold0119 (13-75)||(14256-14318)
scaffold0119 (13-75)||(19936-19998)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 1292590 - 1292767
Alignment:
Q  76 gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtgtataagttgagttttcacgcg 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1292590 gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtgtataagttgagttttcacgcg 1292689  T
Q  176 tggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacacttacttcaatatccaatat 253  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1292690 tggcatccactaatttaattctataaatacctttatccaaaggcgtgtgtcttccacacttacttcaatatccaatat 1292767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 1292431 - 1292493
Alignment:
Q  13 aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1292431 aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact 1292493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 13937 - 13840
Alignment:
Q  139 aaaagttattaaagtgtataagttgagttttcacgcgtggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacactt 236  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13937 aaaagttattaaagtgtatacgttgagttttcacgcgtggcacccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacactt 13840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 19617 - 19520
Alignment:
Q  139 aaaagttattaaagtgtataagttgagttttcacgcgtggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacactt 236  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19617 aaaagttattaaagtgtatacgttgagttttcacgcgtggcacccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacactt 19520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 14158 - 14080
Alignment:
Q  76 gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtg 154  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14158 gtataaagagataaattaccatccaaattaaaatcaaagtatgaacgcattagattccaaattaaaagttattaaagtg 14080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 19838 - 19760
Alignment:
Q  76 gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtg 154  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19838 gtataaagagataaattaccatccaaattaaaatcaaagtatgaacgcattagattccaaattaaaagttattaaagtg 19760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14318 - 14256
Alignment:
Q  13 aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14318 aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact 14256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 19998 - 19936
Alignment:
Q  13 aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19998 aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact 19936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University