View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21579_low_1 (Length: 672)
Name: NF21579_low_1
Description: NF21579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21579_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 21 - 661
Target Start/End: Original strand, 45693993 - 45694634
Alignment:
| Q |
21 |
gaatcttaaataccaagtgagaatcaacattctatattgatatataaggtttctcagatgtacttagagaacctgaagnnnnnnnnggtcaaccttgttg |
120 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45693993 |
gaatcttaaataccaagtgaaaatcaacattctatattgatatataaggtttctcagatgtacttagagaacctgaagaaaaaaaaggtcaaccttgttg |
45694092 |
T |
|
| Q |
121 |
caattcggtatgagttcttgcaatgcacgcatcctctcattgatcctgtctcttcgtctctgcacgagtgaatcggataaatcagaagcaatattgctaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694093 |
caattcggtatgagttcttgcaatgcacgcatcctctcattgatcctgtctcttcgtctctgcacgagtgaatcggataaatcagaagcaatattgctaa |
45694192 |
T |
|
| Q |
221 |
acatacacttaagatggaaagtttgttatttctacttttcttaaaaggcacaaatggaagatgatcttactcttactcaccctttcagatagattgtgca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694193 |
acatacacttaagatggaaagtttgttatttctacttttcttaaaaggcacaaatggaagatgatcttactcttactcaccctttcagatagattgtgca |
45694292 |
T |
|
| Q |
321 |
cttcggttgaacgatttttcttcgaacccgtaacacctcgtccatgatcagttcttttaacaccgattgattcatcctcaaaatcctacaaattaac-nn |
419 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45694293 |
cttcggttgaacgatttttcttcgagcccgtaacacctcgtccatgatcagttcttttaacaccgattgattcatcctcaaaatcctataaattaacaaa |
45694392 |
T |
|
| Q |
420 |
nnnnnnttgattatagtagaacacaataaaataagccatactcataagataattcaagaaataggacaacttaattataagatatttacttcactgtgcc |
519 |
Q |
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| T |
45694393 |
aaaaaattgattatagtagaacacaataaaataagccatactcataagataattcaagaaataggacaacttaattataagatatttacttcactgtgcc |
45694492 |
T |
|
| Q |
520 |
actcagaatcctcagagtccagattttttcgcttcaaattttgattagcatcatctgaacttctatgcacgccattgtcagagcaaacagaggaagaggc |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694493 |
actcagaatcctcagagtccagattttttcgcttcaaattttgattagcatcatctgaacttctatgcacgccattgtcagagcaaacagaggaagaggc |
45694592 |
T |
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| Q |
620 |
tactgttagctccgtacattttttaaaaacttcttgaccttt |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694593 |
tactgttagctccgtacattttttaaaaacttcttgaccttt |
45694634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 31295666 - 31295595
Alignment:
| Q |
111 |
aaccttgttgcaattcggtatgagttcttgcaatgcacgcatcctctcattgatcctgtctcttcgtctctg |
182 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||| |
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| T |
31295666 |
aaccttattgcaattaggtatgagttcttgcaatgcacacatcttctcatttatcctgtctcttcgcctctg |
31295595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 37935292 - 37935221
Alignment:
| Q |
111 |
aaccttgttgcaattcggtatgagttcttgcaatgcacgcatcctctcattgatcctgtctcttcgtctctg |
182 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |
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| T |
37935292 |
aaccttattgcaattaggtatgagttcttgcaatgcacgcatcttctcatttatcctgtctcttcgcctctg |
37935221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 37935121 - 37935089
Alignment:
| Q |
292 |
cttactcaccctttcagatagattgtgcacttc |
324 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
37935121 |
cttactcaccctttcagatagattatgcacttc |
37935089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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