View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21579_low_3 (Length: 474)
Name: NF21579_low_3
Description: NF21579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21579_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 1624221 - 1623781
Alignment:
| Q |
19 |
aataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatttatatttcatttcctgttttatgttcttgttataa |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1624221 |
aataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcctgttttatgttcttgttataa |
1624122 |
T |
|
| Q |
119 |
gagaaaaaacaatattcactgcttgaaaaagtcgaactaacaacgaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcag |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624121 |
gagaaaaa-caatattcactgcttgaaaaagtcgaactaacaacgaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcag |
1624023 |
T |
|
| Q |
219 |
tgctgaaaagccctatttagttttttctagttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttata |
318 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1624022 |
tgttgaaaagccctatttagttttttctagttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcatggaaatgtgctctttata |
1623923 |
T |
|
| Q |
319 |
tcatagctatatatgatattcataagtgtctaatggctttcttgcaacttgtctagcacgaacactttagagtttagaatgttatttatagtttctaatt |
418 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623922 |
tcatagctatatatgatattcataattctctaatggctttcttgcaacttgtctaacacgaacactttagagtttagaatgttatttatagtttctaatt |
1623823 |
T |
|
| Q |
419 |
tttacatatttctcttgaatcttttaaatttaggcattgatg |
460 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1623822 |
tttacatatttctcttgaatcttttaaattcaggcattgatg |
1623781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 249 - 460
Target Start/End: Complemental strand, 1606873 - 1606659
Alignment:
| Q |
249 |
ttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtc |
348 |
Q |
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||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
1606873 |
ttttaaagccctaaaattcaatactaaatcagtgtttaaaactagttgtcacggaaatgtgctctttatatcataggtatatatgatattcatactggtc |
1606774 |
T |
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| Q |
349 |
taatggctttcttgcaacttgtctagcacgaacactt--tagagtttagaatgttatttatagtttctaa-tttttacatatttctcttgaatcttttaa |
445 |
Q |
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|||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
1606773 |
taatggctttcttgcaacttatgtagcacgaacactttatagagtttagattgttatttatagtttctaattttttacatatttctcttggatcatttaa |
1606674 |
T |
|
| Q |
446 |
atttaggcattgatg |
460 |
Q |
| |
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||||||| ||||||| |
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| T |
1606673 |
atttaggtattgatg |
1606659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 1607200 - 1607056
Alignment:
| Q |
19 |
aataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatttatatttcatttcctgttttatgttcttgttataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1607200 |
aataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcctgttttatgttcttgttataa |
1607101 |
T |
|
| Q |
119 |
gagaaaaaacaatattcactgcttgaaaaagtcgaactaacaacga |
164 |
Q |
| |
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|||| |||||||||||||||||| |||||||| |||||||||||| |
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| T |
1607100 |
gaga-aaaacaatattcactgctagaaaaagtttaactaacaacga |
1607056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 1630196 - 1630117
Alignment:
| Q |
19 |
aataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatttatatttcatttcct |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |
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| T |
1630196 |
aataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
1630117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 10820084 - 10820153
Alignment:
| Q |
20 |
ataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatttatatt |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
10820084 |
ataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagccggtgagttatatt |
10820153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 18785247 - 18785103
Alignment:
| Q |
19 |
aataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatttatatttcatttcctgttttatgttcttgttataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
18785247 |
aataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattataattcatttcctgttttgtgttcttgttataa |
18785148 |
T |
|
| Q |
119 |
gagaaaaaacaatattcactgcttgaaaaagtcgaactaacaacga |
164 |
Q |
| |
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|||| |||||||||||||||||| |||||||| |||||||||||| |
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| T |
18785147 |
gaga-aaaacaatattcactgctagaaaaagtttaactaacaacga |
18785103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 18781563 - 18781475
Alignment:
| Q |
372 |
tagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttaggcattgatg |
460 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18781563 |
tagcacggacactttagagtttagattgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattgatg |
18781475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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