View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21579_low_7 (Length: 214)
Name: NF21579_low_7
Description: NF21579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21579_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 2062751 - 2062557
Alignment:
| Q |
4 |
tgtaaatttcattttcttgttaatgtagaaaccatatataatagaacacaaacctggttgataacatgtatggagtctccttgcacagtgatgttcctaa |
103 |
Q |
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| T |
2062751 |
tgtaaatttcattttcttgttaatgtagaaaccatatataatagaacacaaacctggttgataacatgtatggagtctccttgcacagtgatgttcctaa |
2062652 |
T |
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| Q |
104 |
atcttttatagattgcttgctttagtcccaaaattaaagcacgatactcagcagacctatttgtttgacaacctagtccttcacgaaatcgaaag |
198 |
Q |
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| T |
2062651 |
atcttttatagattgcttgctttagacccaaaattaaagcgcgatactcagcagaactatttttttgacaacctagtccttcacgaaatcgaaag |
2062557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 2058321 - 2058134
Alignment:
| Q |
4 |
tgtaaatttcattttcttgttaatgtagaaaccatatataatagaacacaaacctggttgataacatgtatggagtctccttgcacagtgatgttcctaa |
103 |
Q |
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| T |
2058321 |
tgtaaatttcattttcttgttaatgcaaaaaccata----atagaacacaaacctggttgataacacgtatggtgtctccttgcacaatgatgtttctaa |
2058226 |
T |
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| Q |
104 |
atcttttatagattgcttgctttagtcccaaaattaaagcacgatactcagcagacctatttgtttgacaacctagtccttcacgaaatcga |
195 |
Q |
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| T |
2058225 |
atcttttatagattgcttgctttagtcccaaaattaaagcgcgatactcagcagaactatctgtctgatcgcccagtccttcacggaatcga |
2058134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 2047606 - 2047462
Alignment:
| Q |
51 |
acaaacctggttgataacatgtatggagtctccttgcacagtgatgttcctaaatcttttatagattgcttgctttagtcccaaaattaaagcacgatac |
150 |
Q |
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| T |
2047606 |
acaaacctgattgacaacaagcaaggagtctccatgcacactgatgttcctatatcctttatagattgcttgattaagtcccaaaattaaagcacgatac |
2047507 |
T |
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| Q |
151 |
tcagcagacctatttgtttgacaacctagtccttcacgaaatcga |
195 |
Q |
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| T |
2047506 |
tcagcagcgttatttgtttgatagcccagtccttcacggaatcga |
2047462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 2054179 - 2054023
Alignment:
| Q |
39 |
atataatagaacacaaacctggttgataacatgtatggagtctccttgcacagtgatgttcctaaatcttttatagattgcttgctttagtcccaaaatt |
138 |
Q |
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| T |
2054179 |
atataatagaacacaaacctgattgataacaaggttggagtctccttgcacactgatgttcttaaatcctttattgatagcttgtttcagtcccaatatc |
2054080 |
T |
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| Q |
139 |
aaagcacgatactcagcagacctatttgtttgacaacctagtccttcacgaaatcga |
195 |
Q |
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||||| || ||||||||| ||||||||||| | || ||||||||||| |||||| |
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| T |
2054079 |
aaagcgcggtactcagcaacgttatttgtttgatagcccagtccttcacggaatcga |
2054023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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