View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2157_high_10 (Length: 215)
Name: NF2157_high_10
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2157_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 37937613 - 37937794
Alignment:
| Q |
16 |
tgtgcacgattgtaacgggtggcgaggtaagtagcaagagggtaacagaatgattgaacaagtgatcggaaaagagtgagagaacctaaggcggtggggt |
115 |
Q |
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| T |
37937613 |
tgtgaacgattgtaacgggtggcgaggtaagtagcaagagggtaacagaatgattgaacaagtgatcggaaaagagtgagagaacctaaggcggtggggt |
37937712 |
T |
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| Q |
116 |
cagcgttaagagcagcaccgacttctttgtatactccaggtaacaatgattcatcggctcgttccataatacctgctagatt |
197 |
Q |
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| T |
37937713 |
cagcgttaagagcagcaccgacttctttgtatactccaggtaacaatgattcatcggctcgttccataatacctgctagatt |
37937794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 37922339 - 37922521
Alignment:
| Q |
16 |
tgtgcacgattgtaacgggtggcgaggtaagtagcaagagggtaacagaatgattgaacaagtgatcggaaaagagtgagagaacctaaggcggtggggt |
115 |
Q |
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| T |
37922339 |
tgtgcacgattgtgtcgtgtggcaaggtaagcagcaagagggtaacagaatgcttgaaccagggatcggaaaagagtgagagaacctaacgcagttgggt |
37922438 |
T |
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| Q |
116 |
cagcgttaagagcagcaccgacttctttgtatactccaggtaacaatgattcatcggctcgttccataatacctgctagattt |
198 |
Q |
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| T |
37922439 |
cagcgttgagttcatcaccaatctctttgtatactcctggtaacaatgactcatcagctctctccataatacctgctagattt |
37922521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 37925922 - 37926104
Alignment:
| Q |
16 |
tgtgcacgattgtaacgggtggcgaggtaagtagcaagagggtaacagaatgattgaacaagtgatcggaaaagagtgagagaacctaaggcggtggggt |
115 |
Q |
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||||||||||||| || ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || || | |
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| T |
37925922 |
tgtgcacgattgtgtcgcgtggccaggtaagcagccagagggtaacagaatgattgaacaagggatcggaaaagagtgagggaacctaacgcagttggat |
37926021 |
T |
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| Q |
116 |
cagcgttaagagcagcaccgacttctttgtatactccaggtaacaatgattcatcggctcgttccataatacctgctagattt |
198 |
Q |
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| T |
37926022 |
cagcgttaagttcagcaccaacctctttgtatactcctggaagcaatgactcatcagctctctgcataatacttgctagattt |
37926104 |
T |
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