View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2157_high_2 (Length: 515)

Name: NF2157_high_2
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2157_high_2
NF2157_high_2
[»] chr3 (1 HSPs)
chr3 (18-515)||(44592090-44592591)
[»] scaffold0070 (1 HSPs)
scaffold0070 (432-472)||(14394-14434)


Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 44592591 - 44592090
Alignment:
Q  18 acacacgcacactgcacaagtagtcagtagtaaaagtgatagatcactagcagtgcagcatctgattcattttgaaaggtggtgcttgagtgtgagatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44592591 acacacgcacactgcacaagtagtcagtagtaaaagtgatagatcactagcagtgcagcatctgattcattttgaaaggtggtgtttgagtgtgagatat 44592492  T
Q  118 ggagttggtaaagtagcaaattcgttccttgtgatggtgaaagatacgatagtaacagagagtagtaaatggtgagcgtgggtggtaacagtgtggggga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44592491 ggagttggtaaagtagcaaattcgttccttgtgatggtgaaagatactatagtaacagagagtagtaaatggtgagcgtgggtggtaacagtgtggggga 44592392  T
Q  218 agaaacacagacacggcaacagcaagcaattgacaacacaatggaaatattagatggcacttggctcaa----attgacgtgggttgctgcaccaacgca 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  44592391 agaaacacagacacggcaacagcaagcaattgacaacacaatggaaatattagatggcacttggctcaagtacattgacgtgggttgctgcaccaacgca 44592292  T
Q  314 aaatggaggaaatgtttgtgtctatcaaatctcaactttgacatttcacatttgtgaatgcaacaattgattcatttcacattttttaaatcttcattgc 413  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  44592291 aaatggaggaaatgttcgtgtctatcaaatcttaaatttgacatttcacatttgtgaatgcaacaattgattcatttcacatttttgaaatcttcattgg 44592192  T
Q  414 tccgtctatcaatatatattttttaaaaaaggaaccaaatcaaactaactagtttggatcgattcannnnnnnggtcaagtagttagtggctataattca 513  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||       |||||||||| ||||||||||||||||    
T  44592191 tccgtctatcaatatatattttttaaaaaaggaaccaaattaaactaactagtttggatcgatccatttttttggtcaagtagctagtggctataattca 44592092  T
Q  514 cc 515  Q
    ||    
T  44592091 cc 44592090  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 14434 - 14394
Alignment:
Q  432 ttttttaaaaaaggaaccaaatcaaactaactagtttggat 472  Q
    ||||||||||||||||||||||||||| || | ||||||||    
T  14434 ttttttaaaaaaggaaccaaatcaaacaaattggtttggat 14394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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