View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2157_high_3 (Length: 442)

Name: NF2157_high_3
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2157_high_3
NF2157_high_3
[»] chr7 (4 HSPs)
chr7 (189-432)||(32520449-32520692)
chr7 (15-197)||(32520100-32520285)
chr7 (351-431)||(26525537-26525614)
chr7 (351-396)||(27215417-27215462)
[»] chr6 (3 HSPs)
chr6 (40-395)||(30710632-30710984)
chr6 (84-431)||(14503471-14503816)
chr6 (354-404)||(17304352-17304402)
[»] chr8 (1 HSPs)
chr8 (214-395)||(8240559-8240740)
[»] chr5 (2 HSPs)
chr5 (66-249)||(19576584-19576770)
chr5 (352-396)||(18845326-18845370)
[»] chr3 (1 HSPs)
chr3 (90-382)||(53226199-53226486)
[»] chr2 (2 HSPs)
chr2 (85-255)||(43162482-43162654)
chr2 (112-255)||(43172247-43172390)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 189 - 432
Target Start/End: Original strand, 32520449 - 32520692
Alignment:
Q  189 agcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaacttgaaa 288  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||    
T  32520449 agcagaaagtgtcttgccataggagaatttgaaaacttgtttcacacttgctctgatatcagatgtttaagttttaatgacttagtttttaaacttgaaa 32520548  T
Q  289 atgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgttt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32520549 atgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgcccgcttatgttt 32520648  T
Q  389 gtgttgtgcacttactgctgggagaaaaaagaatgaaaagggca 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32520649 gtgttgtgcacttactgctgggagaaaaaagaatgaaaagggca 32520692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 32520100 - 32520285
Alignment:
Q  15 aatattgatgggacacaatttttta---aaataattaaataaaacgtacaaatgggttctaagcgcataattcagtcttatatgcagaataatatgttat 111  Q
    ||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  32520100 aatattgatgggacacaatttttttttcaaataattaaataaaacttacaaatgggttctaagcacataaatcagtcttatatgcagaataatatgttat 32520199  T
Q  112 gagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatgagtcaaagaaagtagaaacactataagcagaaag 197  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32520200 gagatgagaccaccaaacctgattgcttgttctgagcatgaacaatgaaatgagtcaaagaaagtagaaacactataagcagaaag 32520285  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 26525614 - 26525537
Alignment:
Q  351 ctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgtgcacttactgctgggagaaaaaagaatgaaaagggc 431  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||||| ||   ||||| |||||| || ||||||||||||    
T  26525614 ctaaatttaataaaaatgaaaagtgcttgcttatgtttgtggtgtgccct---tgctgagagaaagaacaatgaaaagggc 26525537  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 27215462 - 27215417
Alignment:
Q  351 ctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgtg 396  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  27215462 ctaaatttaataagaatgaaaagtgcttgcttctgtttgtgttgtg 27215417  T

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Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 40 - 395
Target Start/End: Original strand, 30710632 - 30710984
Alignment:
Q  40 aaataattaaataaaacgtacaaatgggttctaagcgcataattcagtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttctt 139  Q
    |||||||||||||||||||||||||  ||||||||| ||| |   |||||||| |||| ||||||||| ||||||||||||  |||||||||||||        
T  30710632 aaataattaaataaaacgtacaaataagttctaagcacatgaaatagtcttatctgcataataatatgctatgagatgagattaccaaacctgattgg-- 30710729  T
Q  140 gttctgcgcatgaacaatgaaatgagtcaaagaaagtagaaacactataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcac 239  Q
    |||||| |||||||| |||||| ||| ||   |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  30710730 gttctgagcatgaactatgaaaggag-cagtcaaagtaaaaacactataagcagaaaatgtcttgccataggagaacttgaaaacttgtttcacactcaa 30710828  T
Q  240 tatgatatcagatgtttaagttttaatgacttagtttttaaacttgaaaatgtgttcatccatgagataaatgattacacatgccaagcaattcacaata 339  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  30710829 tatgatatcagatgtttatgttttaataacttagtttttaaacttgaaaacttgttcatccatgatatagatgattacacatgccaagccattcacaata 30710928  T
Q  340 tatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgt 395  Q
    |||||||||||||||||||||||||||||||||| | | |||| ||||||||||||    
T  30710929 tatgacttagcctaaatttaataagaatgaaaagtgtttgcttttgtttgtgttgt 30710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 84 - 431
Target Start/End: Original strand, 14503471 - 14503816
Alignment:
Q  84 cagtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatgagtcaaagaaagtagaaaca 183  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||| |||  || ||| |  |||||||||||||| |||||||||||||||||||||    
T  14503471 cagtcctatatgcagagtaatatgttatgagatgagactaccaaacctaattcgttcttccgaacatgaacaatgaaaggagtcaaagaaagtagaaaca 14503570  T
Q  184 ctataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaact 283  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||  |||||||||||||||    
T  14503571 ctataagcagaaagtgccttgccatcggagaacttgaaaacttgtttcacactcaatttgatatcatatgtttaagttttaatagcttagtttttaaact 14503670  T
Q  284 tgaaaatgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgctta 383  Q
    ||||||  |||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| ||||     
T  14503671 tgaaaacttgttcatccatgaggtagatgattacacatgccaagctattcacaatatatgactaagcctaaatttaataagaatgaaaaacgcttgcttc 14503770  T
Q  384 tgt-ttgtgttgtgcacttactgctgggagaaaaaagaatgaaaagggc 431  Q
    ||| ||||||||| | ||   |||||  ||||| |||||||||||||||    
T  14503771 tgtgttgtgttgttcgct---tgctgaaagaaagaagaatgaaaagggc 14503816  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 17304352 - 17304402
Alignment:
Q  354 aatttaataagaatgaaaagcgctcgcttatgtttgtgttgtgcacttact 404  Q
    ||||||||||||||||||||  || |||| |||||||||||||| ||||||    
T  17304352 aatttaataagaatgaaaagtacttgcttctgtttgtgttgtgcgcttact 17304402  T

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Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 214 - 395
Target Start/End: Original strand, 8240559 - 8240740
Alignment:
Q  214 aacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaacttgaaaatgtgttcatccatgagataaatga 313  Q
    |||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||  | ||||||||||||||| ||||    
T  8240559 aacttgaaaatttgtttcacactcaatctgatataagatgtttaagttttaatgacttagttttttaacttgaaaacttcttcatccatgagatagatga 8240658  T
Q  314 ttacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgt 395  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||    
T  8240659 ttacacatgccaagccattcacaatatatgacttagcctaaatttaataggaatgaaaagcacttgcttatgtttgtgttgt 8240740  T

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Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 19576770 - 19576584
Alignment:
Q  66 ggttctaagcgcataattcagtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatga- 164  Q
    |||||||||| ||| |  ||||||||| || ||||||||||||||||||||||||| | |||||||||||  |||||||| ||||||||||||||| ||     
T  19576770 ggttctaagcacattaaacagtcttatgtgtagaataatatgttatgagatgagactatcaaacctgattggttgttctgagcatgaacaatgaaaggaa 19576671  T
Q  165 --gtcaaagaaagtagaaacactataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatca 249  Q
      |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  19576670 gagtcaaacaaagtagaaacactataagctgaaagtgtcttgccataagagaacttgaaaacttgtttcacactcaatctgatatca 19576584  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 18845326 - 18845370
Alignment:
Q  352 taaatttaataagaatgaaaagcgctcgcttatgtttgtgttgtg 396  Q
    |||||||||||||||||||||| ||| |||| |||||||| ||||    
T  18845326 taaatttaataagaatgaaaagtgcttgcttctgtttgtgatgtg 18845370  T

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Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 90 - 382
Target Start/End: Complemental strand, 53226486 - 53226199
Alignment:
Q  90 tatatgcagaataatatgttatgagatgagaccaccaaacctgatttct---tgttctgcgcatgaacaatgaaat---gagtcaaagaaagtagaaaca 183  Q
    |||||||||||||||| ||| ||||||||||  | |||| ||||||  |   ||||||   |||||||||||| ||   ||||||||||||||| ||| |    
T  53226486 tatatgcagaataataagttgtgagatgagattatcaaatctgattggtggttgttctaaacatgaacaatgagattatgagtcaaagaaagtaaaaata 53226387  T
Q  184 ctataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaact 283  Q
     |||||| |||||||||||||||| | |||||||||||||||||||||| |||||           ||| ||||| ||||||||| |||||||||||| |    
T  53226386 ttataaggagaaagtgtcttgccacatgagaacttgaaaacttgtttcaaactca-----------gatatttaaattttaatgatttagtttttaaatt 53226298  T
Q  284 tgaaaatgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgctt 382  Q
    ||||||  ||||||||||||||||| | ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  53226297 tgaaaacttgttcatccatgagatagacgattacacatgtcaaaccattcacaatatattacttagcctaaatttaataagaatgaaaagtgcttgctt 53226199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 255
Target Start/End: Complemental strand, 43162654 - 43162482
Alignment:
Q  85 agtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatga---gtcaaagaaagtagaaa 181  Q
    ||||||||| |||||||||||||||   ||||||||| | |||||||||||  |||||||| ||||||||||||||| ||   |||||| | ||||||||    
T  43162654 agtcttata-gcagaataatatgttgcaagatgagactaacaaacctgattggttgttctgagcatgaacaatgaaaggaagagtcaaatagagtagaaa 43162556  T
Q  182 cactataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtt 255  Q
     |||| | | || |||||||||||||||||||||||  |||||||||  |||||||| | ||||| ||||||||    
T  43162555 aactacaggtagcaagtgtcttgccataggagaactcaaaaacttgtaacacactcaatctgataccagatgtt 43162482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 255
Target Start/End: Complemental strand, 43172390 - 43172247
Alignment:
Q  112 gagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaa---atgagtcaaagaaagtagaaacactataagcagaaagtgtcttgccat 208  Q
    |||||||||| |||||||||||||  |||||||| ||||||||||| ||   | |||  ||||||||||||||||||||| | || ||||||| || |||    
T  43172390 gagatgagactaccaaacctgattggttgttctgggcatgaacaataaaaggaagagcgaaagaaagtagaaacactatacgtagcaagtgtcctgtcat 43172291  T
Q  209 aggagaacttgaaaacttgtttcacactcactatgatatcagatgtt 255  Q
    | |    |||||||||||||| |||||||| | |||||  |||||||    
T  43172290 atg---tcttgaaaacttgttacacactcaatctgatacaagatgtt 43172247  T

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