View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2157_low_2 (Length: 515)
Name: NF2157_low_2
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2157_low_2 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 44592591 - 44592090
Alignment:
| Q |
18 |
acacacgcacactgcacaagtagtcagtagtaaaagtgatagatcactagcagtgcagcatctgattcattttgaaaggtggtgcttgagtgtgagatat |
117 |
Q |
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| T |
44592591 |
acacacgcacactgcacaagtagtcagtagtaaaagtgatagatcactagcagtgcagcatctgattcattttgaaaggtggtgtttgagtgtgagatat |
44592492 |
T |
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| Q |
118 |
ggagttggtaaagtagcaaattcgttccttgtgatggtgaaagatacgatagtaacagagagtagtaaatggtgagcgtgggtggtaacagtgtggggga |
217 |
Q |
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| T |
44592491 |
ggagttggtaaagtagcaaattcgttccttgtgatggtgaaagatactatagtaacagagagtagtaaatggtgagcgtgggtggtaacagtgtggggga |
44592392 |
T |
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| Q |
218 |
agaaacacagacacggcaacagcaagcaattgacaacacaatggaaatattagatggcacttggctcaa----attgacgtgggttgctgcaccaacgca |
313 |
Q |
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| T |
44592391 |
agaaacacagacacggcaacagcaagcaattgacaacacaatggaaatattagatggcacttggctcaagtacattgacgtgggttgctgcaccaacgca |
44592292 |
T |
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| Q |
314 |
aaatggaggaaatgtttgtgtctatcaaatctcaactttgacatttcacatttgtgaatgcaacaattgattcatttcacattttttaaatcttcattgc |
413 |
Q |
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| T |
44592291 |
aaatggaggaaatgttcgtgtctatcaaatcttaaatttgacatttcacatttgtgaatgcaacaattgattcatttcacatttttgaaatcttcattgg |
44592192 |
T |
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| Q |
414 |
tccgtctatcaatatatattttttaaaaaaggaaccaaatcaaactaactagtttggatcgattcannnnnnnggtcaagtagttagtggctataattca |
513 |
Q |
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| T |
44592191 |
tccgtctatcaatatatattttttaaaaaaggaaccaaattaaactaactagtttggatcgatccatttttttggtcaagtagctagtggctataattca |
44592092 |
T |
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| Q |
514 |
cc |
515 |
Q |
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| T |
44592091 |
cc |
44592090 |
T |
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Back To:
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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 14434 - 14394
Alignment:
| Q |
432 |
ttttttaaaaaaggaaccaaatcaaactaactagtttggat |
472 |
Q |
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| T |
14434 |
ttttttaaaaaaggaaccaaatcaaacaaattggtttggat |
14394 |
T |
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