View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2157_low_4 (Length: 439)

Name: NF2157_low_4
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2157_low_4
NF2157_low_4
[»] chr7 (27 HSPs)
chr7 (48-413)||(32523918-32524291)
chr7 (319-413)||(29330008-29330102)
chr7 (319-413)||(38247409-38247503)
chr7 (234-413)||(7252982-7253167)
chr7 (319-413)||(41793461-41793555)
chr7 (256-413)||(35582736-35582899)
chr7 (234-413)||(38000906-38001090)
chr7 (319-413)||(114057-114151)
chr7 (234-413)||(43744973-43745158)
chr7 (319-408)||(15030317-15030406)
chr7 (321-413)||(26794096-26794188)
chr7 (354-413)||(34847096-34847155)
chr7 (354-413)||(36311371-36311430)
chr7 (354-413)||(44866844-44866903)
chr7 (349-413)||(35795257-35795321)
chr7 (354-413)||(46255662-46255721)
chr7 (364-413)||(14815928-14815977)
chr7 (364-413)||(15262923-15262972)
chr7 (354-413)||(33951740-33951800)
chr7 (354-413)||(43458950-43459009)
chr7 (354-413)||(25528381-25528440)
chr7 (234-291)||(15030424-15030481)
chr7 (354-413)||(8166531-8166590)
chr7 (348-413)||(24686475-24686540)
chr7 (328-392)||(35965245-35965309)
chr7 (256-295)||(41793395-41793434)
chr7 (234-278)||(29330131-29330175)
[»] chr4 (44 HSPs)
chr4 (234-413)||(47984204-47984390)
chr4 (256-413)||(13752973-13753136)
chr4 (234-413)||(51889847-51890033)
chr4 (322-413)||(53513064-53513155)
chr4 (319-413)||(4353360-4353454)
chr4 (234-413)||(38988371-38988556)
chr4 (319-413)||(47605167-47605261)
chr4 (319-413)||(45657197-45657291)
chr4 (234-413)||(53271530-53271715)
chr4 (319-408)||(44109349-44109438)
chr4 (329-413)||(40690691-40690775)
chr4 (319-413)||(52917182-52917275)
chr4 (348-413)||(55609798-55609863)
chr4 (354-413)||(1603588-1603647)
chr4 (354-413)||(4189160-4189219)
chr4 (354-413)||(6964257-6964316)
chr4 (354-413)||(9035372-9035431)
chr4 (354-413)||(31093904-31093963)
chr4 (354-413)||(38217557-38217616)
chr4 (354-413)||(45229874-45229933)
chr4 (354-413)||(49375121-49375180)
chr4 (354-413)||(52502213-52502272)
chr4 (349-413)||(5419628-5419692)
chr4 (357-413)||(30004365-30004421)
chr4 (354-409)||(167806-167861)
chr4 (354-413)||(4048941-4049000)
chr4 (354-413)||(15542094-15542153)
chr4 (354-413)||(28780059-28780118)
chr4 (354-413)||(35319151-35319210)
chr4 (354-413)||(35159525-35159584)
chr4 (354-413)||(40728834-40728893)
chr4 (354-413)||(45462993-45463052)
chr4 (363-413)||(16024680-16024730)
chr4 (354-411)||(51539419-51539475)
chr4 (354-413)||(38550546-38550605)
chr4 (354-413)||(56462942-56463001)
chr4 (376-413)||(28310158-28310195)
chr4 (234-295)||(53512974-53513035)
chr4 (256-392)||(18559685-18559828)
chr4 (363-407)||(56318594-56318638)
chr4 (354-413)||(52416206-52416264)
chr4 (234-291)||(47605059-47605116)
chr4 (354-392)||(2013023-2013061)
chr4 (234-294)||(40690795-40690855)
[»] chr1 (27 HSPs)
chr1 (47-212)||(19769824-19769997)
chr1 (234-413)||(30233435-30233621)
chr1 (256-413)||(12523416-12523569)
chr1 (234-413)||(10310244-10310430)
chr1 (234-413)||(22333547-22333718)
chr1 (234-413)||(7197717-7197902)
chr1 (319-413)||(29946034-29946128)
chr1 (344-413)||(39600518-39600587)
chr1 (354-414)||(48963606-48963666)
chr1 (354-413)||(22859476-22859535)
chr1 (354-413)||(38861497-38861556)
chr1 (354-413)||(41899559-41899618)
chr1 (354-411)||(12699827-12699884)
chr1 (354-413)||(3516866-3516925)
chr1 (354-413)||(29962202-29962261)
chr1 (354-413)||(33802136-33802195)
chr1 (354-413)||(41087222-41087281)
chr1 (354-413)||(41091990-41092049)
chr1 (354-413)||(44754680-44754739)
chr1 (354-413)||(41724284-41724343)
chr1 (354-413)||(49852532-49852591)
chr1 (354-413)||(50261269-50261328)
chr1 (354-413)||(12529180-12529239)
chr1 (354-412)||(14586610-14586668)
chr1 (348-413)||(43253455-43253520)
chr1 (363-413)||(27217614-27217664)
chr1 (234-295)||(39600450-39600511)
[»] chr3 (30 HSPs)
chr3 (234-413)||(48065599-48065785)
chr3 (319-413)||(49324988-49325082)
chr3 (234-413)||(47372446-47372632)
chr3 (256-411)||(21448327-21448489)
chr3 (319-413)||(8484110-8484203)
chr3 (234-413)||(44205128-44205313)
chr3 (319-413)||(3939145-3939239)
chr3 (328-413)||(30390482-30390567)
chr3 (328-410)||(9128417-9128499)
chr3 (328-410)||(9136524-9136606)
chr3 (319-410)||(41972442-41972533)
chr3 (348-413)||(16479005-16479070)
chr3 (354-413)||(39353913-39353972)
chr3 (354-413)||(47013035-47013094)
chr3 (354-413)||(47647722-47647781)
chr3 (354-413)||(49165376-49165435)
chr3 (357-413)||(53816743-53816799)
chr3 (354-413)||(228183-228242)
chr3 (354-413)||(41193033-41193092)
chr3 (354-412)||(36402096-36402154)
chr3 (354-404)||(39587376-39587426)
chr3 (354-413)||(26501472-26501530)
chr3 (354-411)||(6937231-6937286)
chr3 (357-413)||(31764469-31764525)
chr3 (354-413)||(32530590-32530649)
chr3 (234-295)||(3939273-3939334)
chr3 (234-294)||(8484237-8484297)
chr3 (234-295)||(30390382-30390443)
chr3 (234-294)||(9128324-9128384)
chr3 (234-294)||(9136431-9136491)
[»] chr5 (25 HSPs)
chr5 (234-411)||(24853582-24853767)
chr5 (234-413)||(22192503-22192689)
chr5 (234-413)||(1708979-1709163)
chr5 (234-411)||(5336464-5336647)
chr5 (319-413)||(6430847-6430941)
chr5 (354-413)||(8198187-8198246)
chr5 (354-413)||(8735500-8735559)
chr5 (354-413)||(12785968-12786027)
chr5 (354-413)||(16512863-16512922)
chr5 (354-413)||(25976409-25976468)
chr5 (349-410)||(8298526-8298587)
chr5 (354-411)||(38678738-38678795)
chr5 (354-413)||(3557428-3557487)
chr5 (354-413)||(12724485-12724544)
chr5 (354-413)||(18809776-18809835)
chr5 (354-413)||(26279861-26279920)
chr5 (354-413)||(37884225-37884284)
chr5 (354-411)||(37029572-37029629)
chr5 (354-413)||(20336765-20336824)
chr5 (354-413)||(27115109-27115168)
chr5 (354-410)||(11719216-11719272)
chr5 (354-413)||(17504433-17504492)
chr5 (334-413)||(31469903-31469977)
chr5 (354-411)||(27950877-27950934)
chr5 (354-396)||(37013579-37013621)
[»] chr8 (25 HSPs)
chr8 (322-413)||(42191531-42191622)
chr8 (319-413)||(24834944-24835038)
chr8 (354-413)||(8239260-8239319)
chr8 (354-413)||(28249549-28249608)
chr8 (354-413)||(39259575-39259634)
chr8 (354-413)||(39317891-39317950)
chr8 (354-413)||(43097799-43097858)
chr8 (354-413)||(6348120-6348179)
chr8 (354-409)||(11076991-11077046)
chr8 (354-413)||(13545527-13545586)
chr8 (354-413)||(13678887-13678946)
chr8 (354-413)||(35683289-35683348)
chr8 (354-413)||(40104521-40104581)
chr8 (357-413)||(42131197-42131253)
chr8 (354-413)||(23143400-23143459)
chr8 (354-413)||(31700301-31700360)
chr8 (354-413)||(225474-225533)
chr8 (354-413)||(701887-701946)
chr8 (354-413)||(739097-739156)
chr8 (354-413)||(862992-863051)
chr8 (354-409)||(20092682-20092737)
chr8 (354-413)||(32338636-32338695)
chr8 (354-413)||(37099128-37099187)
chr8 (354-413)||(38224692-38224751)
chr8 (354-410)||(4257952-4258008)
[»] chr2 (22 HSPs)
chr2 (234-413)||(43334350-43334535)
chr2 (234-413)||(5462067-5462235)
chr2 (334-413)||(15111007-15111086)
chr2 (354-413)||(1209188-1209247)
chr2 (354-413)||(6404920-6404979)
chr2 (354-413)||(45235031-45235090)
chr2 (334-413)||(5935531-5935610)
chr2 (354-413)||(13279481-13279540)
chr2 (354-413)||(17136975-17137034)
chr2 (354-413)||(31993351-31993410)
chr2 (318-413)||(34950796-34950891)
chr2 (354-413)||(45117814-45117873)
chr2 (354-413)||(15912516-15912575)
chr2 (354-413)||(38209137-38209196)
chr2 (354-413)||(44760839-44760898)
chr2 (354-413)||(1115909-1115968)
chr2 (354-413)||(30490042-30490100)
chr2 (354-413)||(38702880-38702939)
chr2 (363-413)||(7940816-7940866)
chr2 (373-413)||(16415296-16415336)
chr2 (234-295)||(5935641-5935702)
chr2 (348-413)||(31715168-31715233)
[»] chr6 (15 HSPs)
chr6 (234-413)||(29437186-29437371)
chr6 (329-413)||(18574711-18574795)
chr6 (329-413)||(18584592-18584676)
chr6 (319-413)||(481470-481564)
chr6 (319-413)||(34951182-34951276)
chr6 (354-413)||(11975777-11975836)
chr6 (354-413)||(31319325-31319384)
chr6 (354-413)||(31722176-31722235)
chr6 (354-413)||(34540704-34540763)
chr6 (357-413)||(304565-304621)
chr6 (354-413)||(16396148-16396207)
chr6 (354-413)||(9304273-9304332)
chr6 (354-413)||(31272061-31272120)
chr6 (354-413)||(439858-439917)
chr6 (234-295)||(481379-481440)
[»] scaffold0168 (1 HSPs)
scaffold0168 (340-413)||(17776-17849)
[»] scaffold0121 (1 HSPs)
scaffold0121 (354-413)||(46703-46762)
[»] scaffold0064 (1 HSPs)
scaffold0064 (373-411)||(61085-61123)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 48 - 413
Target Start/End: Complemental strand, 32524291 - 32523918
Alignment:
Q  48 tgatatcataagagaattagatctaagcatcacctcaacgtttgaaattgaatcgtcgccgtaatgctatatcgaggcattgaagaatccagatgctccg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||    
T  32524291 tgatatcataagagaattagatctaagcatcacctcaacgtttaaaattgaatcgtcgccgtaatgctatctcgaggcatggaagaatccaaatgctccg 32524192  T
Q  148 cgattacctcttgca--------gaacaaaccatagaacaacattacatctacctctatctttctctatctgcattcacctgttcaaaaaatttaaagct 239  Q
    |||||||||| | ||        ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  32524191 cgattacctcctccattggagaagaacaaaccatagaacaacattacatctacctctacctttctctatctgcattcacttgttcaaaaaatttaaagct 32524092  T
Q  240 actagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-agccaccagtattgcttat 338  Q
    ||| |||||| || | ||||||||||| ||||||||||| ||||||||||||||||       |||||||||  |||| |  | |||| |||||||||||    
T  32524091 actggtatgtcctatcaggcaacattgatttcttcttccccgccatcttctttcct-cccccctctttcctccccaccggtggtcaccggtattgcttat 32523993  T
Q  339 gtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||||||||| |||| |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  32523992 gtaataagttaagagtagaaatagatttgggatcttatataataagcttaaaaaacttgaaaattattgtaatgt 32523918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 29330102 - 29330008
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29330102 gagccaccggtattgcttatgtaataagttaagagtagaaatatatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 29330008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 38247503 - 38247409
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38247503 gagccaccggtattgcttatgtaataagttaagagtagaaatagatttatgatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 38247409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 7253167 - 7252982
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctaca-------ccagagccacc 326  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||| || |||||||||||||       |||||||||| ||       |  ||||||||    
T  7253167 aaagctactggtatgtcctatcaggcagcattggtttcttcttccccgacatcttctttcct-cccccctctttcctctccatcgatggctggagccacc 7253069  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7253068 ggtattgcttatgtaataagttaagagtataaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 7252982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 41793461 - 41793555
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  41793461 gagccaccagtattgcttatgtaataagttaagagtagaaatagatttatgatcttatgtaataaacttaaaaagcttgaaaattattgtaatgt 41793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 35582899 - 35582736
Alignment:
Q  256 aggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccaccagtattgcttatgtaataagtt 348  Q
    ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| |||| |       ||||||| |||||||||||||||| ||||    
T  35582899 aggcagcattggtttcttcttccccgccatcttctttcctcccccc-tctttcctctccaccggtggctggagccaccggtattgcttatgtaatgagtt 35582801  T
Q  349 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  35582800 aagagtagaaatagatttagtatcttatgtaataaacttaaaaagcttgaaaattattgtaatgt 35582736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 38000906 - 38001090
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | ||||| |||||||| |||||||| ||||||||||||||||       |||||||||| |||| |       ||||| |    
T  38000906 aaagctactggtatgtcctatcaggcagcattggttccttcttccccgccatcttctttcctccccctctctttcctctccaccggtggctggagccatc 38001005  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  38001006 ggtattgcttatgtaataaggtaagagtagaaatagatttaggatcttatgtaataagcttaaaaagctt--aaattattgtaatgt 38001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 114057 - 114151
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||| |||||||||||||||| |||||||||||||||||  ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  114057 gagccactagtattgcttatgtaaaaagttaagagtagaaattgatttaggatcttatataataagcttaaaaagcttgaaaattattgtaatgt 114151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 43745158 - 43744973
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctaca-------ccagagccacc 326  Q
    ||||||||| ||||||  | | ||||||||||||||||||||||| |||||| |||||||||       |||||||||| ||       |  |||||| |    
T  43745158 aaagctactggtatgtcatatcaggcaacattggtttcttcttccccgccatattctttcct-cccccctctttcctctccacaggtggctggagccatc 43745060  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  43745059 ggtattgcttatgtaataagttaagagtagaaatagatttaggatcttatgtaataatcttaaaaagcttaaaaattattgtaatgt 43744973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 15030406 - 15030317
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgt 408  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  15030406 gagccaccggtattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagcttaaaaaggttgaaaattattgt 15030317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 26794096 - 26794188
Alignment:
Q  321 gccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| || |||||||||||| || |||||||||||||||||||||||||    
T  26794096 gccaccggtattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagattcaaaagcttgaaaattattgtaatgt 26794188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 34847155 - 34847096
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  34847155 tagaaataaatttaggatcttatgtaataaccttaaaaagcttgaaaattattgtaatgt 34847096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 36311430 - 36311371
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36311430 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 36311371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 44866844 - 44866903
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44866844 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 44866903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 35795257 - 35795321
Alignment:
Q  349 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  35795257 aagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaatttttgtaatgt 35795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 46255662 - 46255721
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  46255662 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 46255721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 14815977 - 14815928
Alignment:
Q  364 tttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14815977 tttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 14815928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 15262972 - 15262923
Alignment:
Q  364 tttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15262972 tttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 15262923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 33951740 - 33951800
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagctt-aaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33951740 tagaaatagatttaggatcttatgtaataagcttaaaaaagcttgaaaattattgtaatgt 33951800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 43458950 - 43459009
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  43458950 tagaaatagatttaggatcttatgtagtaagtttaaaaagcttgaaaattattgtaatgt 43459009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 25528440 - 25528381
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||| ||||| |||||||||||| |||||||| |||||||||||||||||||    
T  25528440 tagaaatagattgaggatcttatgtaataagtttaaaaagtttgaaaattattgtaatgt 25528381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 15030481 - 15030424
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctt 291  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||||||||||||||||    
T  15030481 aaagctactggtatgtcctatcaggcagcattggtttcttcttcctcgccatcttctt 15030424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 8166531 - 8166590
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||| | |||||||||||||||||||| ||| || |||||||||||||    
T  8166531 tagaaatagatttaggttcttatgtaataagcttaaaaaacttcaacattattgtaatgt 8166590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 24686540 - 24686475
Alignment:
Q  348 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||||||  |||||| | |||||||| ||||||||||||||| || |||||||||||||    
T  24686540 taagattagaaatagttttaggttcttatgtaaaaagcttaaaaagcttcaacattattgtaatgt 24686475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 35965245 - 35965309
Alignment:
Q  328 gtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaa 392  Q
    |||| |||||||||||||| ||||| |||||||| |||| |||| |||||||| |||||| ||||    
T  35965245 gtatagcttatgtaataagataagattagaaatagatttgggatcttatgtaaaaagcttgaaaa 35965309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 41793395 - 41793434
Alignment:
Q  256 aggcaacattggtttcttcttcctcgccatcttctttcct 295  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  41793395 aggcagcattggtttcttcttccccgccatcttctttcct 41793434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 29330175 - 29330131
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcc 278  Q
    ||||||||||||||||||| | ||||| | |||||||||||||||    
T  29330175 aaagctactagtatgttctatcaggcagctttggtttcttcttcc 29330131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 47984390 - 47984204
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    |||||||||||||||| || | ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| || | |       |||||||    
T  47984390 aaagctactagtatgtcctatcaggcagcattggtttcttcttccccgccatcttctttcctccctcactctttcctctccatcggtggcgggagccacc 47984291  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47984290 ggtattgcttatgtaataagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47984204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 256 - 413
Target Start/End: Original strand, 13752973 - 13753136
Alignment:
Q  256 aggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccaccagtattgcttatgtaataagtt 348  Q
    ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| |||| |       |||||||  ||||||||||||||||||||    
T  13752973 aggcagcattggtttcttcttccccgccatcttctttcctcccccc-tctttcctctccaccggtggctggagccaccgatattgcttatgtaataagtt 13753071  T
Q  349 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||| ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  13753072 aagtgtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 13753136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 51889847 - 51890033
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| |  | |||||  |||||||||||||||| ||||||||||||| ||       |||||||||| |||| |       |||||||    
T  51889847 aaagctactggtatgtcccatcaggcagtattggtttcttcttccccgccatcttcttttctccccccctctttcctctccaccggtggctggagccacc 51889946  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     ||||||||||||||||||||||| ||| |||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  51889947 ggtattgcttatgtaataagttaatagtggaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 51890033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 53513064 - 53513155
Alignment:
Q  322 ccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  53513064 ccaccggtattgcttatgtaataagttaagggtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 53513155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 4353360 - 4353454
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||| | ||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4353360 gagccatcggtattgcttatgttataagataagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 4353454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 38988556 - 38988371
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacacc-------agagccacc 326  Q
    |||||||||  ||||| || | || |||||||||||||||||||| | ||||||||||||||       |||||||||| ||||       ||||||| |    
T  38988556 aaagctactgatatgtcctatcagacaacattggtttcttcttcccctccatcttctttcctcccccc-tctttcctctccaccggtggctagagccatc 38988458  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  38988457 ggtatcgtttatgtaataagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 38988371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 47605167 - 47605261
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||||||||||||||||| ||||||||||  ||||| || |||||||||||||||||||||||||||||||||||||||||    
T  47605167 gagccaccggtattgcttatgtaataagttaatagtagaaatagttttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47605261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 45657291 - 45657197
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||  |||| |||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45657291 gagccactggtatagcttatgtaataagataagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45657197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 53271530 - 53271715
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacacca-------gagccacc 326  Q
    ||||||||| |||||| |  | ||||||||||| ||||||||||| |||| |||||||||||       |||||||||| |||||       |||||||     
T  53271530 aaagctactggtatgtcccatcaggcaacattgatttcttcttccccgccgtcttctttcctcccccc-tctttcctctccaccaatggctggagccact 53271628  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
      ||| |||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53271629 gatatagcttatgtaataagataagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 53271715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 44109349 - 44109438
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgt 408  Q
    |||||| | ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||    
T  44109349 gagccatcggtattgcttatgtaataagttaagattagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgt 44109438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 413
Target Start/End: Complemental strand, 40690775 - 40690691
Alignment:
Q  329 tattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  40690775 tattgcttatgtaataagttaagagtaaaaatagatttagcatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 40690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 52917275 - 52917182
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||| | ||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||| |||||||||||| ||||||||||||    
T  52917275 gagccaccagtaatacttatgtaataagttaatagtagaaatagatttaggatcttatgcaataagctt-aaaagcttgaaagttattgtaatgt 52917182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 55609863 - 55609798
Alignment:
Q  348 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  55609863 taagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 55609798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 1603588 - 1603647
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1603588 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 1603647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 4189219 - 4189160
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4189219 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 4189160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 6964257 - 6964316
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6964257 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 6964316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 9035431 - 9035372
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9035431 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 9035372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 31093904 - 31093963
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31093904 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 31093963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 38217616 - 38217557
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38217616 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 38217557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 45229874 - 45229933
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45229874 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45229933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 49375121 - 49375180
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49375121 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 49375180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 52502213 - 52502272
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52502213 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 52502272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 5419628 - 5419692
Alignment:
Q  349 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  5419628 aagattagaattaaatttaggatcttatgtaataggcttaaaaagcttgaaaattattgtaatgt 5419692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 30004365 - 30004421
Alignment:
Q  357 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30004365 aaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 30004421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 167861 - 167806
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgta 409  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  167861 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgta 167806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 4048941 - 4049000
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4048941 tagaaatatatttaggatcttatgtaataaacttaaaaagcttgaaaattattgtaatgt 4049000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 15542153 - 15542094
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  15542153 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 15542094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 28780118 - 28780059
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  28780118 tagaaatagatttaggatcttatgtgataagcttaaaaagcttgaaaattattgtaatgt 28780059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 35319210 - 35319151
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  35319210 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 35319151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 35159525 - 35159584
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||  || |||||||||||||||||||||||||||||||||||||||||    
T  35159525 tagaaatagatttaacatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 35159584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 40728834 - 40728893
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  40728834 tagaaatagatttaggatcttatgtaataaacttaaaaaacttgaaaattattgtaatgt 40728893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 45462993 - 45463052
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  45462993 tagaaatagatttaggatcttatgtaataagtttaaaaagcttgaaaatgattgtaatgt 45463052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 16024680 - 16024730
Alignment:
Q  363 atttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  16024680 atttaggatcttatgtaataagcataaaaagcttgaaaattattgtaatgt 16024730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 51539419 - 51539475
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  51539419 tagaaatagatttaggatcttatgtaataagctt-aaaagcttgaaaattattgtaat 51539475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 38550605 - 38550546
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||||||    
T  38550605 tagaaatagatttaagatcttatgtattaagcttaaaaagcttgaaaattattataatgt 38550546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 56463001 - 56462942
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||    
T  56463001 tagaaatagatttaggatcttgtatcataagcttaaaaagcttgaaaattattgtaatgt 56462942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 28310195 - 28310158
Alignment:
Q  376 tgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28310195 tgtaataagcttaaaaagcttgaaaattattgtaatgt 28310158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 53512974 - 53513035
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcct 295  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||| ||||||||||||||||    
T  53512974 aaagctactggtatgtcctatcaggcagcattggtttcttcttccccgccatcttctttcct 53513035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 392
Target Start/End: Complemental strand, 18559828 - 18559685
Alignment:
Q  256 aggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccaccagtattgcttatgtaataagtt 348  Q
    ||||| ||||||||||||||||| ||||||||||||||||       ||||||||||  |||||       |||||   ||||  ||||||||||||| |    
T  18559828 aggcagcattggtttcttcttccccgccatcttctttcctccccccctctttcctctctaccagtggctggagccattggtataacttatgtaataagat 18559729  T
Q  349 aagagtagaaataaatttaggatattatgtaataagcttaaaaa 392  Q
    |||| |||||||| ||||||||| ||||||| ||||||| ||||    
T  18559728 aagattagaaatagatttaggatcttatgtactaagcttgaaaa 18559685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 56318594 - 56318638
Alignment:
Q  363 atttaggatattatgtaataagcttaaaaagcttgaaaattattg 407  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  56318594 atttaggatcttatgtaataagcttaaaaagtttgaaaattattg 56318638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 52416264 - 52416206
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||| || |||||||||||||||| ||| ||||||||||||||||||||    
T  52416264 tagaaatagatttagaatcttatgtaataagcttacaaa-cttgaaaattattgtaatgt 52416206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 47605059 - 47605116
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctt 291  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||| ||||||||||||    
T  47605059 aaagctactggtatgtcctatcaggcagcattggtttcttcttccccgccatcttctt 47605116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 2013061 - 2013023
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaa 392  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  2013061 tagaaatagatttaggatcttatgtaataagcttaaaaa 2013023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 40690855 - 40690795
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcc 294  Q
    ||||||| | |||||| || | ||||| ||||||||||||||||| | |||||||||||||    
T  40690855 aaagctagtggtatgtcctatcaggcagcattggtttcttcttccccaccatcttctttcc 40690795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 19769997 - 19769824
Alignment:
Q  47 ctgatatcataagagaattagatctaagcatcacctcaacgtttgaaattgaatcgtcgccgtaatgctatatcgaggcattgaagaatccagatgctcc 146  Q
    ||||||| |||||||||  |||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||||||    
T  19769997 ctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctatctcgaggcatggaagaatccagatgctcc 19769898  T
Q  147 gcgattacctctt--------gcagaacaaaccatagaacaacattacatctacctctatctttctctatctgc 212  Q
    ||||||||||| |        | |||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  19769897 gcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctctacctttctctagctgc 19769824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 30233435 - 30233621
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| |||| |       |||||||    
T  30233435 aaagctactggtatgtcctattaggcagcattggtttcttcttccccgccatcttctttcctccccccctctttcctctccaccggtggctggagccacc 30233534  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  30233535 ggtattgcttatgtaataagttaagagtagaaatagatttaggatcttatgtaataagattaaaaaacttgaaaattattgtaatgt 30233621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 12523569 - 12523416
Alignment:
Q  256 aggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccagagccaccagtattgcttatgtaataagttaagagta 355  Q
    ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| |||   ||||||| ||||||||||||||||||||||||||||    
T  12523569 aggcagcattggtttcttcttccccgccatcttctttcctcccccc-tctttcctctccac---agccaccggtattgcttatgtaataagttaagagta 12523474  T
Q  356 gaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||| |||||  || |||||||||||||||||||||||||||||||||||||||||    
T  12523473 gaaatagatttaacatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 12523416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 10310430 - 10310244
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | ||||| |||||||||||||||||||||||||||||||| |       |||||||||| |||| |       |||||||    
T  10310430 aaagctactggtatgtcctatcaggcagcattggtttcttcttcctcgccatcttctttcatccccccctctttcctctccaccggtggctggagccacc 10310331  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||| | ||||||||||||||||||    
T  10310330 agtattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaatgagcttaaaaatcatgaaaattattgtaatgt 10310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 22333718 - 22333547
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccagagccaccagtattg 333  Q
    ||||||||| |||||| || | ||||||||||||||||||||||| |||||||||||||||        ||||  ||     |  |||||||| ||||||    
T  22333718 aaagctactggtatgtcctatcaggcaacattggtttcttcttccccgccatcttctttcc--------tcttcactggtggctggagccaccggtattg 22333627  T
Q  334 cttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  22333626 cttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 22333547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 7197902 - 7197717
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||| | |||||| || | ||||||||||||||||||||||| ||| ||||||||||||       |||||||||| |||| |       |||||||    
T  7197902 aaagctattggtatgtcctatcaggcaacattggtttcttcttccccgcaatcttctttcctcccccc-tctttcctctccaccggtggctccagccacc 7197804  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||||||| || ||||||||||||||||    
T  7197803 agtattgcttatgcaataacttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagtttaaaaattattgtaatgt 7197717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 29946128 - 29946034
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||| ||||||||||||||||||||||||    
T  29946128 gagccaccggtattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagtttataaagcttgaaaattattgtaatgt 29946034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 39600518 - 39600587
Alignment:
Q  344 aagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39600518 aagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39600587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 48963666 - 48963606
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgtg 414  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48963666 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgtg 48963606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 22859476 - 22859535
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22859476 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 22859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 38861497 - 38861556
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38861497 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 38861556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 41899618 - 41899559
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41899618 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 41899559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 12699884 - 12699827
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12699884 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaat 12699827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 3516925 - 3516866
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  3516925 tagaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 3516866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 29962202 - 29962261
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29962202 tagaaataggtttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 29962261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 33802136 - 33802195
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  33802136 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattatagtaatgt 33802195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 41087222 - 41087281
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41087222 tagaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 41087281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 41091990 - 41092049
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41091990 tagaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 41092049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 44754739 - 44754680
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  44754739 tagaaatagatttatgatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 44754680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 41724284 - 41724343
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  41724284 tagaaatagatttaggatcttatgtaataagtttaaaaatcttgaaaattattgtaatgt 41724343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 49852532 - 49852591
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  49852532 tagaaatagatttaggatcttatgtaataagcttaaagtgcttgaaaattattgtaatgt 49852591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 50261328 - 50261269
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||    
T  50261328 tagaaatagatttatgatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 50261269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 12529180 - 12529239
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||    
T  12529180 tagaaatagatttaagatcttatataataagcttacaaagcttgaaaattattgtaatgt 12529239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 14586668 - 14586610
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatg 412  Q
    |||||||| ||||||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  14586668 tagaaatagatttaggatcttatgcaataagtttaaaaaacttgaaaattattgtaatg 14586610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 43253455 - 43253520
Alignment:
Q  348 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||||||  |||||| | ||||||||||| |||||||||||| || |||||||||||||    
T  43253455 taagattagaaatagttttaggtttttatgtaataaacttaaaaagcttcaacattattgtaatgt 43253520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 27217614 - 27217664
Alignment:
Q  363 atttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||| | |||||||||||||||||||||||| ||  ||||||||||||    
T  27217614 atttaggttcttatgtaataagcttaaaaagcttcaacgttattgtaatgt 27217664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 39600450 - 39600511
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcct 295  Q
    ||||||||| |||||| |  | || |||||||||||||||||||| | ||||||||||||||    
T  39600450 aaagctactggtatgtcccatcagacaacattggtttcttcttccccaccatcttctttcct 39600511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 48065599 - 48065785
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | || |||||||||||||||||| | ||||||||||||||||       |||||||||| |||| |       |||||||    
T  48065599 aaagctacttgtatgtcctatcagacaacattggtttcttctttcccgccatcttctttcctccccccctctttcctctccaccggtggctggagccacc 48065698  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
      ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  48065699 gatattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 48065785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 49325082 - 49324988
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  49325082 gagccaccagtattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 49324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 47372632 - 47372446
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| |  | ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| |||| |       ||||||     
T  47372632 aaagctactggtatgtcccattaggcagcattggtttcttcttccccgccatcttctttcctccccccctctttcctctccaccggtggttggagccact 47372533  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||    
T  47372532 ggtattgcttatgtaataagttaagagtagaaatagatttagcatctcatgtaataagcttaaaaagcttgaaaattattgtaatgt 47372446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 256 - 411
Target Start/End: Complemental strand, 21448489 - 21448327
Alignment:
Q  256 aggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacacca-------gagccaccagtattgcttatgtaataagtt 348  Q
    ||||||||||||||| ||||||| |||||||||| |||||       |||||||||| ||||        || ||||| |||||||||||||||||||||    
T  21448489 aggcaacattggttttttcttccccgccatcttcattcctccccccctctttcctctccaccgatggctggaaccaccggtattgcttatgtaataagtt 21448390  T
Q  349 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  21448389 aagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaat 21448327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 8484203 - 8484110
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  8484203 gagccaccggtattgcttatgtaataagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttg-aaattattgtaatgt 8484110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 44205313 - 44205128
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | ||||||||||||||||||||||| |||||||||||||| |       |||||| ||| |||| |       |||||||    
T  44205313 aaagctactggtatgtgctatcaggcaacattggtttcttcttccccgccatcttctttcgtcccccc-tctttcatctccaccggtggctggagccacc 44205215  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
      ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  44205214 gatattgcttatgtaataagttaagagtataaatagatttaggatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 44205128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 3939239 - 3939145
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||||||| ||||||||||||| ||||||||||||||||    
T  3939239 gagccaccagtattgcttatgtactaagttaagagtagaaatagatttagcatcttatgtaataggcttaaaaagcttaaaaattattgtaatgt 3939145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 30390482 - 30390567
Alignment:
Q  328 gtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  30390482 gtattgcttatgtaataagttaagagtaaaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 30390567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 9128417 - 9128499
Alignment:
Q  328 gtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 410  Q
    |||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9128417 gtatagcttatgtaataagataagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaa 9128499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 9136524 - 9136606
Alignment:
Q  328 gtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 410  Q
    |||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9136524 gtatagcttatgtaataagataagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaa 9136606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 41972533 - 41972442
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 410  Q
    |||| ||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  41972533 gagctaccggtattgcttatgtattaaattaagagtagaaataaatttaggattttatgtaataagcttaaaaaatttgaaaattattgtaa 41972442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 16479005 - 16479070
Alignment:
Q  348 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  16479005 taagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 16479070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 39353913 - 39353972
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39353913 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39353972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 47013094 - 47013035
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47013094 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47013035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 47647722 - 47647781
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47647722 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47647781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 49165435 - 49165376
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49165435 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 49165376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 53816743 - 53816799
Alignment:
Q  357 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53816743 aaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 53816799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 228183 - 228242
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  228183 tagaaatagatttaggatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 228242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 41193092 - 41193033
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  41193092 tagaaatagatttaggatcttacgtaataagcttaagaagcttgaaaattattgtaatgt 41193033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 36402154 - 36402096
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatg 412  Q
    |||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  36402154 tagaaatagatttaagatcttatttaataagcttaaaaagcttgaaaattattgtaatg 36402096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 39587376 - 39587426
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaatta 404  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  39587376 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaatta 39587426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 26501530 - 26501472
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  26501530 tagaaatagatttaggatcttatataataagcttaaaaag-ttgaaaattattgtaatgt 26501472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 6937231 - 6937286
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    |||||||| ||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  6937231 tagaaatagatttaggatcttatgtaa--agcttaaaaagcttgaaaattattgtaat 6937286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 31764525 - 31764469
Alignment:
Q  357 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||| | |||| ||||||||||||||||||| || |||||||||||||    
T  31764525 aaataaatttaggttcttatataataagcttaaaaagcttcaacattattgtaatgt 31764469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 32530590 - 32530649
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| || ||||| ||| ||||  |||||||||||||||||||||||||||||||||||    
T  32530590 tagaattagatttaagatcttataaaataagcttaaaaagcttgaaaattattgtaatgt 32530649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 3939334 - 3939273
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcct 295  Q
    ||||||||| |||||| || | |||||||||||||||||| ||||  |||||||||||||||    
T  3939334 aaagctactggtatgtcctatcaggcaacattggtttctttttccctgccatcttctttcct 3939273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 8484297 - 8484237
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcc 294  Q
    ||||||||| ||||||||  | ||||| ||||||||||||||||| | |||||||||||||    
T  8484297 aaagctactggtatgttccattaggcagcattggtttcttcttcccctccatcttctttcc 8484237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 30390382 - 30390443
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcct 295  Q
    ||||||||| |||||| || | ||||| |||||||||| |||||| | ||||||||||||||    
T  30390382 aaagctactggtatgtcctatcaggcagcattggtttcatcttcccctccatcttctttcct 30390443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 9128324 - 9128384
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcc 294  Q
    ||||||||| ||||||||| | | ||| ||||| ||||||||||| | |||||||||||||    
T  9128324 aaagctactggtatgttctatcaagcagcattgttttcttcttcccccccatcttctttcc 9128384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 9136431 - 9136491
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcc 294  Q
    ||||||||| ||||||||| | | ||| ||||| ||||||||||| | |||||||||||||    
T  9136431 aaagctactggtatgttctatcaagcagcattgttttcttcttcccccccatcttctttcc 9136491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 411
Target Start/End: Complemental strand, 24853767 - 24853582
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnn-tctttcctctacaccag-------agccac 325  Q
    |||||||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||        |||||||||| ||||||       ||||||    
T  24853767 aaagctactagtatgtcctatcaggcagcattgatttcttcttccccgccatcttctttcctcccccccctctttcctctccaccagtggctggagccac 24853668  T
Q  326 cagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    | |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  24853667 cggtattgcttatgtaataagttaagagtagaaatagatttaggatctcatgtaataagcttaaaaagcttgaaaattaatgtaat 24853582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 22192503 - 22192689
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| |  | || |||||||| ||||||||||| |||||||||||||||        |||||||||| |||| |       |||||||    
T  22192503 aaagctactggtatgtcccatcagacaacattgatttcttcttccccgccatcttctttccctcccccctctttcctctccaccggtggctggagccacc 22192602  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  22192603 ggtattgcttatgtaataagttaagagtagaaataaatttaggatcttatgtaataagcttagatagcttgaaaattattgtaatgt 22192689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 1709163 - 1708979
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||| | ||||||||||||||       |||||||||| |||| |       |||||||    
T  1709163 aaagctactggtatgtcctatcaggcagcattggtttcttcttccccaccatcttctttcctccccc--tctttcctctccaccggtggctggagccacc 1709066  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
      ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  1709065 gatattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 1708979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 234 - 411
Target Start/End: Complemental strand, 5336647 - 5336464
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| ||||||||  | ||| ||||||||||||||||||| ||||||||||||||||       | |||||||| |||| |       ||||| |    
T  5336647 aaagctacttgtatgttccatcaggaaacattggtttcttcttccccgccatcttctttcctcccccctt-tttcctctccaccggtggctggagccatc 5336549  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
     |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||    
T  5336548 ggtattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaat 5336464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 6430941 - 6430847
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||  || |||||||||||||||||||| ||||||||||||||||||||    
T  6430941 gagccaccggtattgcttatgtaataagttaagagtagaaatagatttaacatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 6430847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 8198187 - 8198246
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8198187 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 8198246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 8735500 - 8735559
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8735500 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 8735559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 12785968 - 12786027
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12785968 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 12786027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 16512922 - 16512863
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16512922 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 16512863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 25976468 - 25976409
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25976468 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 25976409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 8298587 - 8298526
Alignment:
Q  349 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 410  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8298587 aagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaa 8298526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 38678795 - 38678738
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38678795 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaat 38678738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 3557428 - 3557487
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3557428 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattataatgt 3557487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 12724485 - 12724544
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12724485 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 12724544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 18809776 - 18809835
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  18809776 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 18809835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 26279861 - 26279920
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  26279861 tagaaatagatttaggatcttatgtaatacgcttaaaaagcttgaaaattattgtaatgt 26279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 37884225 - 37884284
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  37884225 tagaaatagatttaggatcttacgtaataagcttaaaaagcttgaaaattattgtaatgt 37884284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 37029629 - 37029572
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  37029629 tagaaatagattaaggatcttatgtaataagcttaaaaagcttgaaaattattgtaat 37029572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 20336824 - 20336765
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||    
T  20336824 tagaattaaatttagtatcttatgtaataggcttaaaaagcttgaaaattattgtaatgt 20336765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 27115109 - 27115168
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  27115109 tagaaatagatttatgatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 27115168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 11719272 - 11719216
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 410  Q
    |||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  11719272 tagaaatatatttaagatcttatgtaataagtttaaaaagcttgaaaattattgtaa 11719216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 17504433 - 17504492
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||    
T  17504433 tagaaatagatttatgatcttatataataagtttaaaaagcttgaaaattattgtaatgt 17504492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 31469977 - 31469903
Alignment:
Q  334 cttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||| ||||| ||||||||  ||||||||     |||||||||||||||||||| || |||||||||||||    
T  31469977 cttatgtaataagataagattagaaatagttttaggat-----gtaataagcttaaaaagcttcaacattattgtaatgt 31469903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 27950877 - 27950934
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    ||||||||  |||||| | |||||||||||||||||||||||| || |||||||||||    
T  27950877 tagaaatagttttaggttcttatgtaataagcttaaaaagcttcaacattattgtaat 27950934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 37013579 - 37013621
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagctt 396  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  37013579 tagaaatagatttaggatcttatgtaataagcttataaagctt 37013621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 42191531 - 42191622
Alignment:
Q  322 ccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42191531 ccaccggtattgcttatgtaataagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 42191622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 24834944 - 24835038
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  24834944 gagccaccggtattgcttatgttataagttaagagtagaaatagatttaagatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 24835038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 8239319 - 8239260
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8239319 tagaagtagatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 8239260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 28249549 - 28249608
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28249549 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 28249608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 39259634 - 39259575
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39259634 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39259575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 39317950 - 39317891
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39317950 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39317891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 43097858 - 43097799
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43097858 tagaaatagatttaggatattatgtaataagcttaaaaagcttgaaaattattgcaatgt 43097799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 6348120 - 6348179
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  6348120 tagaaatagatttaggatcttatataataagcttaaaaagcttgaaaattattgtaatgt 6348179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 409
Target Start/End: Original strand, 11076991 - 11077046
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgta 409  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  11076991 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgta 11077046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 13545586 - 13545527
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13545586 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattttaatgt 13545527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 13678887 - 13678946
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13678887 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattttaatgt 13678946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 35683348 - 35683289
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35683348 tagaaatagatttaggatcttatgtaataagcttaaaaagctttaaaattattgtaatgt 35683289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 40104581 - 40104521
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagctta-aaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  40104581 tagaaatagatttaggatcttatgtaataagcttaaaaaagcttgaaaattattgtaatgt 40104521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 42131253 - 42131197
Alignment:
Q  357 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  42131253 aaatatatttaagatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 42131197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 23143459 - 23143400
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  23143459 tagaaatagatttagaatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 23143400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 31700360 - 31700301
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  31700360 tagaaatagatttaggatcttatgtaataagcttaaaaagcctgaaaattattataatgt 31700301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 225474 - 225533
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  225474 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 225533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 701887 - 701946
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  701887 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 701946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 739097 - 739156
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  739097 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 739156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 862992 - 863051
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  862992 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 863051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 409
Target Start/End: Original strand, 20092682 - 20092737
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgta 409  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  20092682 tagaaatagatttaagatcttatgcaataagcttaaaaagcttgaaaattattgta 20092737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 32338636 - 32338695
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| ||||||||||| ||| |||||||||||||||||||||||||    
T  32338636 tagaaatagatttaagatcttatgtaataaactttaaaagcttgaaaattattgtaatgt 32338695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 37099128 - 37099187
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| | |||||||||| ||||||| ||||||||||||||||||||    
T  37099128 tagaaatagatttaggatctgatgtaataaggttaaaaaacttgaaaattattgtaatgt 37099187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 38224751 - 38224692
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||  |||||| |||||||||||||| ||||||| ||| || |||||||||||||    
T  38224751 tagaaatagttttaggttattatgtaataagtttaaaaaacttcaacattattgtaatgt 38224692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 4258008 - 4257952
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 410  Q
    ||||||||| |||| | | |||||||||||||||||||| ||| || ||||||||||    
T  4258008 tagaaataattttaagttcttatgtaataagcttaaaaaacttcaacattattgtaa 4257952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 43334350 - 43334535
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| |||| |       ||||| |    
T  43334350 aaagctactggtatgtcctatcaggcagcattggtttcttcttccccgccatcttctttcctcccccc-tctttcctctccaccggtggctggagccatc 43334448  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  43334449 ggtattgcttatgtaataagttaagagtagaaatagatttagcatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 43334535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 234 - 413
Target Start/End: Complemental strand, 5462235 - 5462067
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccagagccaccagtattg 333  Q
    |||||||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||       |||||||||| |||| | |           |    
T  5462235 aaagctactagtatgtcctatcaggcatcattgatttcttcttccccgccatcttctttcctccccccctctttcctctccaccggtg-----------g 5462147  T
Q  334 cttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5462146 cttatgtaataagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 5462067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 15111086 - 15111007
Alignment:
Q  334 cttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||| ||||| | |||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  15111086 cttatgtaataagataagattggaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 15111007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 1209247 - 1209188
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1209247 tagaaatatatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 1209188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 6404920 - 6404979
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6404920 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 6404979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 45235031 - 45235090
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45235031 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45235090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 5935610 - 5935531
Alignment:
Q  334 cttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||| ||| | ||||||||| |||||| | |||||||||||||||||||||||| || |||||||||||||    
T  5935610 cttatgtaataagataaaattagaaataattttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 5935531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 13279481 - 13279540
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  13279481 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattaatgtaatgt 13279540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 17137034 - 17136975
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  17137034 tagaaatagatttaggaacttatgtaataagcttaaaaagcttgaaaattattgtaatgt 17136975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 31993410 - 31993351
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  31993410 tagaaatagatttaggatcttatgtaataagcttaaaaatcttgaaaattattgtaatgt 31993351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 34950796 - 34950891
Alignment:
Q  318 agagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||  |||| |||||||||||||| ||||| || |||||  |||||| | |||||||||||||||||||||||| || |||||||||||||    
T  34950796 agagccactggtatagcttatgtaataagataagattataaatagttttaggttcttatgtaataagcttaaaaagctttaacattattgtaatgt 34950891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 45117814 - 45117873
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  45117814 tagaaatagatttaagatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45117873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 15912516 - 15912575
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  15912516 tagaaatagatttaggatcttatggaataaacttaaaaagcttgaaaattattgtaatgt 15912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 38209137 - 38209196
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  38209137 tagaaatagatttaggatcttatgtaataagcttaaaagacttgaaaattattgtaatgt 38209196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 44760839 - 44760898
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  44760839 tagaaatagatttaggatcttatgtaataagcttgaaaaggttgaaaattattgtaatgt 44760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 1115909 - 1115968
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| ||||||    
T  1115909 tagaaatagatttaggatcttatgtaataagcctaaaaagcttgaaagttattataatgt 1115968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 30490100 - 30490042
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  30490100 tagaaatagatttaggatcttatgtaataa-cttaaaaagcttgaaaattatagtaatgt 30490042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 38702939 - 38702880
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||| |||||||| ||||||| |||||||||||||||||||    
T  38702939 tagaaatagatttaggatcttatataataagcctaaaaagtttgaaaattattgtaatgt 38702880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 7940866 - 7940816
Alignment:
Q  363 atttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  7940866 atttaggatcttatataataagcttaaaaagtttgaaaattattgtaatgt 7940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 16415296 - 16415336
Alignment:
Q  373 ttatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  16415296 ttatgtaataagcttaaaaagcttcaacattattgtaatgt 16415336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 5935702 - 5935641
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcct 295  Q
    |||||||||  ||||| || | ||||| |||| |||||||||||| ||||||||||||||||    
T  5935702 aaagctactgctatgtcctattaggcagcatttgtttcttcttccccgccatcttctttcct 5935641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 31715233 - 31715168
Alignment:
Q  348 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||||||  |||||| | ||||||||||||||||||||| || |  |||||||||||||    
T  31715233 taagattagaaatagttttaggttcttatgtaataagcttaaaaagtttcatcattattgtaatgt 31715168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 29437186 - 29437371
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcctnnnnnnntctttcctctacaccag-------agccacc 326  Q
    ||||||||| |||||| || | ||||| ||||||||||||||||| ||||||||||||||||       |||||||||| |||| |       |||||||    
T  29437186 aaagctactggtatgtcctatcaggcatcattggtttcttcttccccgccatcttctttcctcccccc-tctttcctctccaccggtggctggagccacc 29437284  T
Q  327 agtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
     |||||||||||||||||||||||||||| ||||| |||||  || |||||||||||||||||||||||||||| ||||||||||||    
T  29437285 ggtattgcttatgtaataagttaagagtaaaaatagatttaacatcttatgtaataagcttaaaaagcttgaaagttattgtaatgt 29437371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 329 - 413
Target Start/End: Original strand, 18574711 - 18574795
Alignment:
Q  329 tattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  18574711 tattgcttgtgtaataagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 18574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 329 - 413
Target Start/End: Original strand, 18584592 - 18584676
Alignment:
Q  329 tattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  18584592 tattgcttgtgtaataagttaagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 18584676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 481470 - 481564
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||  |||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  481470 gagccactggtattgcttatgtaataagttaagagtataaatagatttaggatcttgtgtaataagattaaaaagcttgaaaattattgtaatgt 481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 34951182 - 34951276
Alignment:
Q  319 gagccaccagtattgcttatgtaataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||| ||||||||||| ||||||||||||| | ||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  34951182 gagccaccagtgttgcttatgtagtaagttaagagtatagatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 34951276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 11975777 - 11975836
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11975777 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 11975836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 31319325 - 31319384
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  31319325 tagaaataaatttaggatcttatgtaataaccttaaaaagcttgaaaattattgtaatgt 31319384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 31722235 - 31722176
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31722235 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 31722176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 34540763 - 34540704
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34540763 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 34540704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 304565 - 304621
Alignment:
Q  357 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  304565 aaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 304621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 16396148 - 16396207
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  16396148 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 16396207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 9304332 - 9304273
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  9304332 tagaaatagatttaggatcatatgtaataagcttaaaaaacttgaaaattattgtaatgt 9304273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 31272061 - 31272120
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  31272061 tagaaatagatttaggatcttatataataaacttaaaaagcttgaaaattattgtaatgt 31272120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 439858 - 439917
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| ||||||||| |||||||||| ||||||||||||| |||||||||| |||||    
T  439858 tagaaatagatttaggatcttatgtaataggcttaaaaagcttaaaaattattgcaatgt 439917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 481379 - 481440
Alignment:
Q  234 aaagctactagtatgttctgtaaggcaacattggtttcttcttcctcgccatcttctttcct 295  Q
    ||||||||| |||| | || | ||||| |||| |||||||||||| ||||||||||||||||    
T  481379 aaagctactggtatatcctatcaggcagcattagtttcttcttccccgccatcttctttcct 481440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 17776 - 17849
Alignment:
Q  340 taataagttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  17776 taataagttaagagtaggaataaatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 17849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 46762 - 46703
Alignment:
Q  354 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 413  Q
    |||||||| | ||||| | |||||||||||||||||||||||| || |||||||||||||    
T  46762 tagaaatagaattaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 46703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 61123 - 61085
Alignment:
Q  373 ttatgtaataagcttaaaaagcttgaaaattattgtaat 411  Q
    |||||||||||||||||||||||| || |||||||||||    
T  61123 ttatgtaataagcttaaaaagcttcaacattattgtaat 61085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University