View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2157_low_5 (Length: 421)

Name: NF2157_low_5
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2157_low_5
NF2157_low_5
[»] chr7 (4 HSPs)
chr7 (32-385)||(6723953-6724305)
chr7 (237-276)||(22334221-22334260)
chr7 (202-275)||(11466937-11467010)
chr7 (186-230)||(4995902-4995945)
[»] chr5 (7 HSPs)
chr5 (190-390)||(18179213-18179410)
chr5 (190-260)||(20101000-20101070)
chr5 (250-362)||(7741250-7741362)
chr5 (236-394)||(30791534-30791690)
chr5 (191-259)||(16072261-16072329)
chr5 (187-259)||(19571017-19571090)
chr5 (203-268)||(20695926-20695991)
[»] chr8 (7 HSPs)
chr8 (185-353)||(6887069-6887225)
chr8 (289-398)||(8541716-8541825)
chr8 (202-249)||(13528979-13529026)
chr8 (202-249)||(13618518-13618565)
chr8 (303-393)||(28259511-28259601)
chr8 (200-282)||(35134469-35134551)
chr8 (349-393)||(6359059-6359103)
[»] chr4 (6 HSPs)
chr4 (187-306)||(21048325-21048442)
chr4 (186-260)||(18778301-18778375)
chr4 (190-322)||(33520125-33520256)
chr4 (190-255)||(8926417-8926482)
chr4 (200-268)||(42498738-42498807)
chr4 (211-276)||(9575847-9575912)
[»] chr2 (5 HSPs)
chr2 (187-280)||(31275245-31275338)
chr2 (190-254)||(25461225-25461289)
chr2 (200-252)||(19004576-19004628)
chr2 (187-306)||(21847297-21847415)
chr2 (101-150)||(13589906-13589955)
[»] chr1 (5 HSPs)
chr1 (234-323)||(28411527-28411614)
chr1 (188-294)||(23420498-23420602)
chr1 (205-276)||(23506766-23506837)
chr1 (187-282)||(33175505-33175600)
chr1 (314-392)||(15297625-15297702)
[»] chr6 (8 HSPs)
chr6 (202-340)||(12960292-12960423)
chr6 (190-323)||(21604662-21604793)
chr6 (235-323)||(26498765-26498851)
chr6 (212-322)||(12966952-12967060)
chr6 (212-322)||(12969138-12969246)
chr6 (212-322)||(12971324-12971432)
chr6 (187-306)||(16440501-16440618)
chr6 (54-90)||(23072516-23072552)
[»] chr3 (2 HSPs)
chr3 (190-396)||(21828059-21828264)
chr3 (187-273)||(7779421-7779507)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 32 - 385
Target Start/End: Original strand, 6723953 - 6724305
Alignment:
Q  32 ggagaaattaaatagggcagagatgaagaaaagcataaggttcaactactggtagatgtgtgttgcgcactatgagttgcatgtcatgtagctaagaaga 131  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6723953 ggagaaattaaataggacagagatgaagaaaagcataaggttcaactactggtagatgtgtgttgcacactatgagttgcatgtcatgtagctaagaaga 6724052  T
Q  132 attcaaaagtggtcagctagtggtggatgcgcaatgcatgcattaagttgtgtgacaccaaatcgtacacaagtaataaggtagtaagttatcgtctcta 231  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6724053 attcaaaagtggtcagctactggtggatgcgcaatgcatgtattaagttatgtgtcaccaaatcatacacaagtaataaggtagtaagttatcgtctcta 6724152  T
Q  232 tcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttcca 331  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724153 tcaggattgtcattcaacttggtaattagcagaaattgttagaaat-aatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttcca 6724251  T
Q  332 atgcgagattactttgttgtgatttagaagtatgatggtgatcagggaatcctt 385  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  6724252 atgcgagattactttgttgtaatttagaagtataatggtgatcagggaatcctt 6724305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 22334221 - 22334260
Alignment:
Q  237 attgtcattcaacttggtaattagcggaatttgttagaaa 276  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  22334221 attgtcattcaacttggtaattagctgaatttattagaaa 22334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 11466937 - 11467010
Alignment:
Q  202 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaa 275  Q
    ||||||||| |||||| ||||| ||||| |   ||||||||||||||||| | ||||||| |||||| ||||||    
T  11466937 aagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaattagcagaatttattagaa 11467010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 4995902 - 4995945
Alignment:
Q  186 acaccaaatcgtacacaagtaataaggtagtaagttatcgtctct 230  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||    
T  4995902 acaccaaatcatac-caagtaataaagtagtaagttatcgtctct 4995945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 390
Target Start/End: Complemental strand, 18179410 - 18179213
Alignment:
Q  190 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 289  Q
    |||||| || ||||||||||| |||||||||||| || || ||  | ||| || ||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  18179410 caaatcataaacaagtaataaagtagtaagttattgtatccatatgcattatctttcaacttggtaaatagcagaatttattagaaataaa-agaattaa 18179312  T
Q  290 aaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtgatttagaagtatgatggtgatcagggaatccttgaat 389  Q
    || |||||||||||||||| ||||||||||||||  || ||||||||||||||  ||||||||||| |||||||| |  ||||| |  ||||||||||||    
T  18179311 aa-gagatgaagtggtttgcaggattttaattgt-tttcccaatgcgagattaagttgttgtgattcagaagtataaccgtgattacagaatccttgaat 18179214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 20101070 - 20101000
Alignment:
Q  190 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 260  Q
    |||||| ||| |||||||||| |||||||||||| ||||| || ||||||||| |||||||||||| ||||    
T  20101070 caaatcatactcaagtaataaagtagtaagttatagtctccataaggattgtcgttcaacttggtagttag 20101000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 362
Target Start/End: Original strand, 7741250 - 7741362
Alignment:
Q  250 ttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgtt 349  Q
    ||||||||| ||||||||| ||||||||||  | | | ||||| ||||||||||||||  | ||||||||||||  |  ||||||||| |||| | ||||    
T  7741250 ttggtaattggcggaatttattagaaataacaaaattaaaaaacagatgaagtggtttacaagattttaattgtcttgcccaatgcgaaattagtatgtt 7741349  T
Q  350 gtgatttagaagt 362  Q
    |||||| ||||||    
T  7741350 gtgattcagaagt 7741362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 394
Target Start/End: Complemental strand, 30791690 - 30791534
Alignment:
Q  236 gattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttcca-atg 334  Q
    ||||||| ||||| ||| ||||||||||||||| || |||||||| ||| || | || ||||||||||||||| ||| |||||||| | || || | |||    
T  30791690 gattgtcgttcaaattgataattagcggaatttatttgaaataaa-agattttagaaaagatgaagtggtttgcagggttttaatttttctatcaacatg 30791592  T
Q  335 cgagattactttgttgtgatttagaagtatgatggtgatcagggaatccttgaatccccc 394  Q
    ||||||||  || | |||||| |||||||| | || ||| ||| ||||||||||||||||    
T  30791591 cgagattaggtt-tggtgattgagaagtataacggcgat-aggaaatccttgaatccccc 30791534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 16072329 - 16072261
Alignment:
Q  191 aaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaatta 259  Q
    ||||||||| ||||||| || ||||||||| || ||||| |  |||||||||| |||||||||||||||    
T  16072329 aaatcgtactcaagtaagaaagtagtaagtaattgtctccacaaggattgtcagtcaacttggtaatta 16072261  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 19571090 - 19571017
Alignment:
Q  187 caccaaatcgtacacaagtaataaggtagtaagtt-atcgt-ctctatcaggattgtcattcaacttggtaatta 259  Q
    |||||||||||| |||| |||||| |||||||||| ||||| |||||  |||||||||||||||||| |||||||    
T  19571090 caccaaatcgta-acaaataataaagtagtaagtttatcgttctctacaaggattgtcattcaacttagtaatta 19571017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 20695991 - 20695926
Alignment:
Q  203 agtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaattt 268  Q
    |||||||| |||||||||||||||||| |   |||||||| ||||||| ||||||||  |||||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaactcggtaattataggaattt 20695926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 353
Target Start/End: Original strand, 6887069 - 6887225
Alignment:
Q  185 gacaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 284  Q
    ||||||||||| ||| |||||| |||  ||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||| ||||||||           
T  6887069 gacaccaaatcatacccaagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttattagaaat------- 6887161  T
Q  285 attaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtga 353  Q
        ||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||  |||||||||    
T  6887162 ----aaaagagatgaag-ggtttgtaggattttaattgtcctgcccaatgcgagattagattgttgtga 6887225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 8541825 - 8541716
Alignment:
Q  289 aaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtgatttagaagtatgatggtgatcagggaatccttgaa 388  Q
    |||||||||||||||||||| |||||||||||| | ||  ||||||||||||||  ||||||||||| | |||||| | |  ||| ||||||||| ||||    
T  8541825 aaaagagatgaagtggtttgcaggattttaattattctgcccaatgcgagattaggttgttgtgattgaaaagtataacgaagattagggaatccatgaa 8541726  T
Q  389 tcccccctcc 398  Q
    ||||| ||||    
T  8541725 tcccctctcc 8541716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 13528979 - 13529026
Alignment:
Q  202 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 249  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13528979 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 13618518 - 13618565
Alignment:
Q  202 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 249  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13618518 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 393
Target Start/End: Original strand, 28259511 - 28259601
Alignment:
Q  303 ggtttgtaggattttaattgtactttccaatgcgagattactttgttgtgatttagaagtatgatggtgatcagggaatccttgaatcccc 393  Q
    ||||| ||| |||||||||||  | || ||||||||||||  ||||| ||||| |||| ||| | |||||| || ||||||||||||||||    
T  28259511 ggtttttagaattttaattgttatgtctaatgcgagattatgttgttatgattcagaattataacggtgattagagaatccttgaatcccc 28259601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 35134469 - 35134551
Alignment:
Q  200 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 282  Q
    |||||||||||  |||| |||||  ||||| || ||||||||| || |||||||||||||||  ||||| |||||| ||||||    
T  35134469 acaagtaataaaatagtgagttactgtctccataaggattgtcgtttaacttggtaattagcaaaatttattagaagtaaata 35134551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 6359103 - 6359059
Alignment:
Q  349 tgtgatttagaagtatgatggtgatcagggaatccttgaatcccc 393  Q
    ||||||||||| |||| | |||||| |||||||||||||||||||    
T  6359103 tgtgatttagatgtataacggtgattagggaatccttgaatcccc 6359059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 21048442 - 21048325
Alignment:
Q  187 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaat 286  Q
    ||||||||||||| ||| ||||||    ||||||||||||||  |  ||||||||  ||||||||||||||||||||||||| ||||||||||| |||||    
T  21048442 caccaaatcgtacgcaaataataaaaaggtaagttatcgtcttcacaaggattgttgttcaacttggtaattagcggaatttattagaaataaa-agaat 21048344  T
Q  287 taaaaagagatgaagtggtt 306  Q
    |  |||||||||||||||||    
T  21048343 t-taaagagatgaagtggtt 21048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 18778375 - 18778301
Alignment:
Q  186 acaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 260  Q
    ||||||||| |||| |||||||||| ||||||||||||||| || ||  |||||||| |||||||| ||||||||    
T  18778375 acaccaaattgtactcaagtaataaagtagtaagttatcgtttccatgtggattgtcgttcaactttgtaattag 18778301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 33520256 - 33520125
Alignment:
Q  190 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 289  Q
    ||||||||| ||||||| ||| ||||||||||||  |||  || |  |||||| ||||||| | ||| ||| ||||||| ||| |||||||| ||||| |    
T  33520256 caaatcgtagacaagtagtaaagtagtaagttattctcttcataaaaattgtcgttcaactcgataaatagtggaatttattataaataaat-gaattta 33520158  T
Q  290 aaagagatgaagtggtttgtaggattttaattg 322  Q
    ||||||||||| ||||||  ||| |||||||||    
T  33520157 aaagagatgaaatggtttacagggttttaattg 33520125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 8926482 - 8926417
Alignment:
Q  190 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggta 255  Q
    |||||| ||| |||||||||| |||| ||||||||||||| ||  |||||||| ||||||||||||    
T  8926482 caaatcatactcaagtaataaagtagcaagttatcgtctccatagggattgtcgttcaacttggta 8926417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 42498807 - 42498738
Alignment:
Q  200 acaagtaataaggtagtaagtta-tcgtctctatcaggattgtcattcaacttggtaattagcggaattt 268  Q
    ||||||||||| ||||||||| | | || | ||| ||||||||| |||||||||||||||||||||||||    
T  42498807 acaagtaataatgtagtaagtgaattgtttttataaggattgtcgttcaacttggtaattagcggaattt 42498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 9575912 - 9575847
Alignment:
Q  211 ggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaa 276  Q
    |||||||| || ||||||||||   ||||||| ||||||||| ||||||||||||| | |||||||    
T  9575912 ggtagtaaattgtcgtctctatagagattgtcgttcaacttgataattagcggaatatattagaaa 9575847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 31275338 - 31275245
Alignment:
Q  187 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaa 280  Q
    |||||||||||| ||||||||||| |||||||||||||||||| || ||||||||  ||| ||||||||| |||  ||| || |||||||||||    
T  31275338 caccaaatcgtaaacaagtaataaagtagtaagttatcgtctccataaggattgttgttccacttggtaaatagaagaacttattagaaataaa 31275245  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 25461289 - 25461225
Alignment:
Q  190 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggt 254  Q
    ||||| ||||||||||||||| |||||||||||||||||| |   |||||||| |||||||||||    
T  25461289 caaattgtacacaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaacttggt 25461225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 19004576 - 19004628
Alignment:
Q  200 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttg 252  Q
    |||| |||||| |||||||||||||||||||||  |||||||| |||||||||    
T  19004576 acaaataataaagtagtaagttatcgtctctatatggattgtcgttcaacttg 19004628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 21847297 - 21847415
Alignment:
Q  187 caccaaatcgtacacaagtaa-taaggtagtaagttatcgtctctatca-ggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 284  Q
    |||||||||||| | |||||| ||| ||| |||| |||||| ||| ||| ||||||||||||||||| |||||||| || |||| |||||||| || | |    
T  21847297 caccaaatcgtaaataagtaactaaagtactaagctatcgtatct-tcatggattgtcattcaacttagtaattagtgggatttattagaaatcaaaata 21847395  T
Q  285 attaaaaagagatgaagtggtt 306  Q
    ||  ||||||||| ||||||||    
T  21847396 at--aaaagagataaagtggtt 21847415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 13589955 - 13589906
Alignment:
Q  101 ctatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagcta 150  Q
    ||||||||||||||||  | | |||||||| |||||||||||||||||||    
T  13589955 ctatgagttgcatgtcgcgcatctaagaaggattcaaaagtggtcagcta 13589906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 28411614 - 28411527
Alignment:
Q  234 aggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 323  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||| || | |||| |||||||||||||||||||||||  ||||||||||    
T  28411614 aggattgccattcaactcgttaattagcggaatttattagaaat-aacaaaatt-aaaagagatgaagtggtttgtagtgttttaattgt 28411527  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 294
Target Start/End: Original strand, 23420498 - 23420602
Alignment:
Q  188 accaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaatt 287  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |  ||||||||| |||||||| | ||||| | |||||| ||||||   ||||||||     
T  23420498 accaaatcgta-acaagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaac-gaatttattagaagcgaatagaatg 23420595  T
Q  288 aaaaaga 294  Q
    |||||||    
T  23420596 aaaaaga 23420602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 23506837 - 23506766
Alignment:
Q  205 taataaggtagtaagttatcgtctctatcag-gattgtcattcaacttggtaattagcggaatttgttagaaa 276  Q
    |||||| |||||||||||||||||||| ||| || |||| |||||||||||||||||| |||||| |||||||    
T  23506837 taataaagtagtaagttatcgtctcta-cagtgaatgtcgttcaacttggtaattagcagaatttattagaaa 23506766  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 33175505 - 33175600
Alignment:
Q  187 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 282  Q
    ||||||||| || |||||||||||  |||||||||||| |||| |    ||||||| |||||||| | |||||| ||||||| |||||| ||||||    
T  33175505 caccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaattagaggaatttattagaagtaaata 33175600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 15297625 - 15297702
Alignment:
Q  314 ttttaattgtactttccaatgcgagattactttgttgtgatttagaagtatgatggtgatcagggaatccttgaatccc 392  Q
    |||||||||||||  ||||||||||||||  || |||||||| ||| |||| | | |||| ||||||||||||||||||    
T  15297625 ttttaattgtactgcccaatgcgagattaggtt-ttgtgattcagaggtataacgatgattagggaatccttgaatccc 15297702  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 12960292 - 12960423
Alignment:
Q  202 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaag 301  Q
    ||||||||| ||  ||||||| |||||| || | ||||||| ||||||||||||||||| | ||||| ||| || |||| | |||  ||||||||| |||    
T  12960292 aagtaataaagtcataagttaccgtctccataaagattgtcgttcaacttggtaattagagaaatttcttaaaagtaaaaaaaat--aaaagagataaag 12960389  T
Q  302 tggtttgtaggattttaattgtactttccaatgcgagat 340  Q
         ||||||||||||||||| ||| ||||||||||||    
T  12960390 -----tgtaggattttaattgtccttcccaatgcgagat 12960423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 21604662 - 21604793
Alignment:
Q  190 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 289  Q
    |||||| ||| ||| |||||| |||||||| |||| |||  |  | |||||||  |||||| | |||||||||||||||  || |||||| |||||||||    
T  21604662 caaatcttacgcaaataataaagtagtaagctatcatctacacaaagattgtcgctcaactagataattagcggaatttactataaataa-tagaattaa 21604760  T
Q  290 aaagagatgaagtggtttgtaggattttaattgt 323  Q
    || ||||||||||| |||| |||| |||||||||    
T  21604761 aa-gagatgaagtgatttgcaggaatttaattgt 21604793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 26498765 - 26498851
Alignment:
Q  235 ggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 323  Q
    |||||||| ||||||||||||||||| ||||||| |||||| |||  |||||| | || ||| ||||| |||||| || ||||||||||    
T  26498765 ggattgtcgttcaacttggtaattagaggaatttattagaagtaa--agaatttataaaagacgaagttgtttgttgggttttaattgt 26498851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 12966952 - 12967060
Alignment:
Q  212 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 311  Q
    ||||||||||||||||||  |  ||||| |||||||||| ||||||| |||| |||| |||||| |  | |||||| | || ||||||||||||||||      
T  12966952 gtagtaagttatcgtctccgtagggattatcattcaactcggtaattggcggcatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12967049  T
Q  312 gattttaattg 322  Q
    | |||||||||    
T  12967050 ggttttaattg 12967060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 12969138 - 12969246
Alignment:
Q  212 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 311  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| |  | |||||| | || ||||||||||||||||      
T  12969138 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12969235  T
Q  312 gattttaattg 322  Q
    | |||||||||    
T  12969236 ggttttaattg 12969246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 12971324 - 12971432
Alignment:
Q  212 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 311  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| |  | |||||| | || ||||||||||||||||      
T  12971324 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12971421  T
Q  312 gattttaattg 322  Q
    | |||||||||    
T  12971422 ggttttaattg 12971432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 16440618 - 16440501
Alignment:
Q  187 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaat 286  Q
    ||||||||| |||| | |||| || |||||||||||||| |||||  ||||| ||  |||||||  | |||||||||||||| ||| || |||||| |||    
T  16440618 caccaaatcatacataggtaaaaaagtagtaagttatcgcctctacaaggatcgttgttcaactaagcaattagcggaatttattataagtaaataaaat 16440519  T
Q  287 taaaaagagatgaagtggtt 306  Q
      ||||||||| || |||||    
T  16440518 --aaaagagataaactggtt 16440501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 23072516 - 23072552
Alignment:
Q  54 atgaagaaaagcataaggttcaactactggtagatgt 90  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  23072516 atgaagaaaagcataaggatcaactactggtacatgt 23072552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 396
Target Start/End: Original strand, 21828059 - 21828264
Alignment:
Q  190 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 289  Q
    |||||| ||| |||||||||| |||||||||||| ||||| |    ||||||| || || |  |||||||| ||||||| |||||||||||   | ||||    
T  21828059 caaatcatacgcaagtaataaagtagtaagttat-gtctccactgagattgtcgttaaaatcagtaattagtggaatttattagaaataaaataatttaa 21828157  T
Q  290 aaagagatgaag-tggtttgtaggattttaattgtactttccaatgcgagattactttgttgtgatttagaagtatgatggtgatcagggaatccttgaa 388  Q
     ||||||||||| | ||||| ||| |||||  ||| |||  |||||||||||||  || |||||||| | || ||| |||  ||| ||||||||||||||    
T  21828158 taagagatgaagttcgtttgcagggttttacatgtccttctcaatgcgagattaggtt-ttgtgattcataattataatgacgattagggaatccttgaa 21828256  T
Q  389 tcccccct 396  Q
    ||||||||    
T  21828257 tcccccct 21828264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 7779421 - 7779507
Alignment:
Q  187 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttag 273  Q
    ||||||||| ||  |||||| |||| | ||||||||| ||||| || |||||||||||||||| |||||| |||| |||||| ||||    
T  7779421 caccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggattgtcattcaacatggtaaatagcagaatttattag 7779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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