View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2157_low_6 (Length: 414)
Name: NF2157_low_6
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2157_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 14960045 - 14960435
Alignment:
| Q |
20 |
taagtggactgcagggtgaaataaactgcatttatcaaagtgagtatattttcattcttcattttctcaagaatgctaacatttatttttcttgtggaaa |
119 |
Q |
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| T |
14960045 |
taagtggactgcagggtgaaataaactgcatttatcaaagtgagtatattttcattcttcattttctcaagaatgctaacatttatttttcttgtggaaa |
14960144 |
T |
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| Q |
120 |
ctacagaaatgaacaagatagaattttgcacaccataatttaannnnnnnnncatctgttactgttgttgtttgcagatacagtggttattgtatcaata |
219 |
Q |
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| T |
14960145 |
ctacagaaatgaacaagatagaattttgcacaccataatttaatttttttttcatctgttactgttgttgtttgcagatacagtggttattgtttcaata |
14960244 |
T |
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| Q |
220 |
gtggtctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattc--------atggttcccaatcatgagtactgc |
311 |
Q |
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| T |
14960245 |
gtggtctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattcatggttgaatggttcccaatcatgagtactgc |
14960344 |
T |
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| Q |
312 |
agttggctaactaacttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccatgaaaatgaacatgacctttgct |
406 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960345 |
agttgg----ctaacttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccatgaaaatgaacatgacctttgct |
14960435 |
T |
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