View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2157_low_8 (Length: 338)

Name: NF2157_low_8
Description: NF2157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2157_low_8
NF2157_low_8
[»] chr1 (11 HSPs)
chr1 (15-338)||(6521636-6521959)
chr1 (15-211)||(6506903-6507099)
chr1 (15-334)||(6512681-6513000)
chr1 (15-194)||(6517220-6517399)
chr1 (102-219)||(47778041-47778158)
chr1 (281-338)||(6517076-6517133)
chr1 (122-219)||(47788183-47788280)
chr1 (15-187)||(47760133-47760299)
chr1 (122-215)||(47781969-47782062)
chr1 (110-187)||(6523733-6523810)
chr1 (299-338)||(6506770-6506809)
[»] scaffold0341 (4 HSPs)
scaffold0341 (15-211)||(928-1124)
scaffold0341 (15-211)||(8581-8778)
scaffold0341 (299-338)||(795-834)
scaffold0341 (299-338)||(8448-8487)
[»] chr7 (1 HSPs)
chr7 (18-163)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (16-136)||(28856512-28856632)
chr5 (84-134)||(28831318-28831368)
chr5 (16-136)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 6521636 - 6521959
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521636 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 6521735  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6521736 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 6521835  T
Q  215 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||    
T  6521836 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggac 6521935  T
Q  315 agtgaccttaaatatgctgtagga 338  Q
    ||||||||||||||||||||||||    
T  6521936 agtgaccttaaatatgctgtagga 6521959  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 6507099 - 6506903
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  6507099 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 6507000  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 211  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  6506999 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 6506903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 6513000 - 6512681
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| ||||  |||||||||||| |||||    
T  6513000 gacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtc 6512901  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 214  Q
    |||| |||||||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| ||||| || |||| | |||||  |||    
T  6512900 aaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagaccttttta 6512801  T
Q  215 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac 314  Q
    ||| |  |||| |   ||||| || |||||||| | ||| ||| | |||||  ||||         ||||| ||||||||||| |||| ||||||| ||     
T  6512800 tttaggatggagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgat 6512701  T
Q  315 agtgaccttaaatatgctgt 334  Q
    ||||||||||||||||||||    
T  6512700 agtgaccttaaatatgctgt 6512681  T

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Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 6517399 - 6517220
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||  |||||||||| |||||| ||| |||||||||||||  |||||||||||| |||||    
T  6517399 gacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtc 6517300  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 194  Q
    ||||  ||||| |||||||||| |||||| | |||||   |||||||||||| ||||||| |||||||||||||||||||    
T  6517299 aaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc 6517220  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 47778041 - 47778158
Alignment:
Q  102 acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa 201  Q
    ||||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| ||||    
T  47778041 acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa 47778140  T
Q  202 ttggacctgcttattttg 219  Q
    |||||||||| |||||||    
T  47778141 ttggacctgcatattttg 47778158  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 6517133 - 6517076
Alignment:
Q  281 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatgctgtagga 338  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6517133 ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtagga 6517076  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
Q  122 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 219  Q
    |||||||||||||||||||||| | |||||  |||| ||||| || || ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  47788183 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 47788280  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 47760299 - 47760133
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| |||||||||||||| |||| | | | ||| |  | ||| |||||  ||||||  |||||||| ||| ||| |||||    
T  47760299 gacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtc 47760200  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 187  Q
     ||||| ||||||||||||||| ||||      ||||  | ||||||||||| ||||||||||| ||||||||    
T  47760199 caaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt 47760133  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
Q  122 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat 215  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || ||||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat 47782062  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  110 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 187  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 6506809 - 6506770
Alignment:
Q  299 agctgcatcaggggacagtgaccttaaatatgctgtagga 338  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  6506809 agctgcatcgggggaaagtgaccttaaatatgctgtagga 6506770  T

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Target: scaffold0341 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 1124 - 928
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  1124 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 1025  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 211  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  1024 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 928  T

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Target: scaffold0341; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 8778 - 8581
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  8778 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 8679  T
Q  115 aaaa-ccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 211  Q
    ||||  |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  8678 aaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 8581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 834 - 795
Alignment:
Q  299 agctgcatcaggggacagtgaccttaaatatgctgtagga 338  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  834 agctgcatcgggggaaagtgaccttaaatatgctgtagga 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 8487 - 8448
Alignment:
Q  299 agctgcatcaggggacagtgaccttaaatatgctgtagga 338  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  8487 agctgcatcgggggaaagtgaccttaaatatgctgtagga 8448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 722161 - 722305
Alignment:
Q  18 aaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaa 117  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||||   |||    
T  722161 aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa 722259  T
Q  118 accgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt 163  Q
    ||||||||||||||||||||| |||| | |||||| ||||||||||    
T  722260 accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 28856632 - 28856512
Alignment:
Q  16 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 115  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| ||||||     
T  28856632 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc 28856533  T
Q  116 aaaccgaaaagaagcaattgg 136  Q
    ||||  |||||||||||||||    
T  28856532 aaacaaaaaagaagcaattgg 28856512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
Q  84 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt 134  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||    
T  28831368 aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 28861909 - 28861789
Alignment:
Q  16 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 115  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| | ||||     
T  28861909 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcc 28861810  T
Q  116 aaaccgaaaagaagcaattgg 136  Q
     |||| |||||||||||||||    
T  28861809 taaccaaaaagaagcaattgg 28861789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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