View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_high_1 (Length: 768)
Name: NF21580_high_1
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_high_1 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 189 - 752
Target Start/End: Original strand, 51225935 - 51226498
Alignment:
| Q |
189 |
tttttgcaatgttttattatacaacaagttttttagtcagcaaaaatatctggaagatcaggattaacagagaacttaaaccatatttttctctcaaaat |
288 |
Q |
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| T |
51225935 |
tttttgcaatgttttattatacaacaagttttctaggcagcaaaaatatctggaagatcaggattaacagagaacctaaaccatctttttctctcaatat |
51226034 |
T |
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| Q |
289 |
atttcaaacaaggctgcaatacaagtccaattataacagctgagatacttatgagaaagaccttcaaagtagcaagagctaaaaccacaaatattagtac |
388 |
Q |
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| T |
51226035 |
atttcaaacaaggctgcaatacaagtccaattataacagctgagatacttatgagaaagaccttcaaagtagcaagagctaaaaccacaaatattagtag |
51226134 |
T |
|
| Q |
389 |
tgttggaactatacacatcaacactgctccaattttcccaactggtattttataaggtctagatacatttgaaaactttatcctcaacttaacaaatgca |
488 |
Q |
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| T |
51226135 |
tgttggaactatacacatcaacactcctccaattttcccaactggtattttataaggtctagatacatttggaaactttatcctcaacttaacaaatgca |
51226234 |
T |
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| Q |
489 |
acaaactccataagcataccaaaacagtataagaaattttcagcagcaacaatttcttgaaaactcaaccaagaaagcaaaaccacaccagaagctgaga |
588 |
Q |
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| T |
51226235 |
acaaactccataagcataccaaaacagtataagaaattttcagcagcaacaatttcttgaaaactcaaccaagaaagcaaaaccacaccagaagctgaga |
51226334 |
T |
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| Q |
589 |
acaaaataccaataagaggtgttccataacgtgacctttttgcaaagaattcaggaagcatacctctttcagccatacctagaagctgaaatgagtcact |
688 |
Q |
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| T |
51226335 |
acaaaataccaataagaggtgttccataacgtgacctttttgcaaagaattcaggaagcatacctctttcagccatacctagaagctgaaatgagtcact |
51226434 |
T |
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| Q |
689 |
actcatctcagctacaaacattcccatatttgataaagctgatgcaacttgaacccatgttctt |
752 |
Q |
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| T |
51226435 |
actcatctcagctacaaacattcccatatttgataaagctgatgcaacttgaacccatgttctt |
51226498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 51225763 - 51225913
Alignment:
| Q |
1 |
agacaggctaagccggaaaatggatctatataaa--caagagataacacacaagaagacatggtgaaaattaacctttggatttggagtcacaatttgtt |
98 |
Q |
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| T |
51225763 |
agacaggctaagccggaaaatggatctatatatatacagaagataacacacaagaagacatggtgaaaattaacctttagatttggagtcacaatttgtt |
51225862 |
T |
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| Q |
99 |
tattgtaaaaagctgatagtgacatctactacagtaagtaaaaatgttttt |
149 |
Q |
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| T |
51225863 |
tattgtaaaaagctgatagtgacatctactacagtaagtaaaaatgttttt |
51225913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 483 - 718
Target Start/End: Original strand, 41860 - 42095
Alignment:
| Q |
483 |
aatgcaacaaactccataagcataccaaaacagtataagaaattttcagcagcaacaatttcttgaaaactcaaccaagaaagcaaaaccacaccagaag |
582 |
Q |
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| T |
41860 |
aatgcaataaactcaagaatcattccgaaacagtacaagaaattttcagcagccacaatttcatcaaaactaagccatgaaagtaaaatcacaccggagg |
41959 |
T |
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| Q |
583 |
ctgagaacaaaataccaataagaggtgttccataacgtgacctttttgcaaagaattcaggaagcatacctctttcagccatacctagaagctgaaatga |
682 |
Q |
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| T |
41960 |
ccgaaaaaagtatccctataataggcgtaccgtagcgcgaccttttggtaaagaactcaggcaacattcccctctcagccattcctagaagctgaaatga |
42059 |
T |
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| Q |
683 |
gtcactactcatctcagctacaaacattcccatatt |
718 |
Q |
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| T |
42060 |
gtcggcgctcatttcagcaacaaacaatcccatatt |
42095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 483 - 721
Target Start/End: Complemental strand, 11055581 - 11055343
Alignment:
| Q |
483 |
aatgcaacaaactccataagcataccaaaacagtataagaaattttcagcagcaacaatttcttgaaaactcaaccaagaaagcaaaaccacaccagaag |
582 |
Q |
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||||||| ||||||| || ||| |||| |||||| |||||||| || ||||| ||||||||||||||||| | ||| || || | || |||||||| | |
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| T |
11055581 |
aatgcaatgaactccagaatcatcccaatacagtacaagaaattctctgcagctacaatttcttgaaaactaagccatgatagtagaattacaccagagg |
11055482 |
T |
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| Q |
583 |
ctgagaacaaaataccaataagaggtgttccataacgtgacctttttgcaaagaattcaggaagcatacctctttcagccatacctagaagctgaaatga |
682 |
Q |
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| T |
11055481 |
ctgaaaaaagaatccctataagaggcgttccgtgacgagacctcttggtgaaaaactctggcaacattcccctctcagccattcctagaagctggtaaga |
11055382 |
T |
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| Q |
683 |
gtcactactcatctcagctacaaacattcccatatttga |
721 |
Q |
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||| || ||||| || || || ||||||||||| ||||| |
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| T |
11055381 |
gtcgctgctcatttcggcaacgaacattcccatgtttga |
11055343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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