View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_high_13 (Length: 552)

Name: NF21580_high_13
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_high_13
NF21580_high_13
[»] chr5 (9 HSPs)
chr5 (16-536)||(28695449-28695967)
chr5 (153-485)||(28673334-28673666)
chr5 (114-502)||(29021442-29021831)
chr5 (16-108)||(28710026-28710118)
chr5 (253-352)||(28662714-28662815)
chr5 (148-242)||(28662013-28662107)
chr5 (279-339)||(41886782-41886842)
chr5 (331-384)||(28532574-28532627)
chr5 (16-45)||(28673303-28673332)
[»] chr8 (4 HSPs)
chr8 (114-385)||(18314660-18314930)
chr8 (254-387)||(32151729-32151862)
chr8 (254-386)||(18318805-18318937)
chr8 (119-226)||(17642962-17643069)
[»] chr1 (3 HSPs)
chr1 (16-106)||(12483955-12484045)
chr1 (279-390)||(7554953-7555064)
chr1 (16-78)||(23341332-23341394)
[»] chr6 (1 HSPs)
chr6 (269-390)||(9411885-9412006)
[»] chr4 (8 HSPs)
chr4 (249-386)||(532582-532719)
chr4 (119-390)||(8186386-8186657)
chr4 (172-233)||(2367988-2368049)
chr4 (172-216)||(2373554-2373598)
chr4 (172-217)||(5106639-5106684)
chr4 (172-204)||(2518924-2518956)
chr4 (289-337)||(7308365-7308413)
chr4 (172-204)||(12124536-12124568)
[»] chr7 (2 HSPs)
chr7 (19-108)||(11781163-11781252)
chr7 (25-108)||(21508871-21508954)
[»] chr3 (1 HSPs)
chr3 (19-106)||(13930264-13930351)


Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Original strand, 28695449 - 28695967
Alignment:
Q  16 atgaagtagggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatagtgatatgtgtaatgttttaatgatttaagcaagtctaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  28695449 atgaagtagggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatag--atatgtgtaatgttttaatgatttaagcgagtctaa 28695546  T
Q  116 aacattacaactatgacctctctcgcttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgccggaagaac 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28695547 aacattacaactatgacctctctcacttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgcccgaagaac 28695646  T
Q  216 tcgatattagtgatcccagagagttcatctaccacagtagcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28695647 tcgatattagtgatcccagagagttcatctaccacagtagcttacacgatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatct 28695746  T
Q  316 ctctcgtcatcactacatcaacgaccaatcacttttccacttgataaacaactggaagcttctcgaagaggttatagtcttttcttgtcatagattaacc 415  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28695747 ctctcgtcatcactacatcaacggccaaccacttttccacttgataaacaactgcaagcttctcgaagaggttatagtcttttcttgtcatagattaacc 28695846  T
Q  416 atctcctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaacagacaactatgcaattgttatatgtatgca 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28695847 atctcctgcattgcttctgcttgccgcaagagaccaacattgacggtgtcaatttccattacttccgaacagacaactatgcaattgttatatgtatgcc 28695946  T
Q  516 agcttgtttaaacttccatag 536  Q
     ||||||||||||||||||||    
T  28695947 tgcttgtttaaacttccatag 28695967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 153 - 485
Target Start/End: Original strand, 28673334 - 28673666
Alignment:
Q  153 ttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgccggaagaactcgatattagtgatcccagagagttcatctaccacag 252  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  28673334 ttgcaactctccatagcaccgatctcttcttcattgctgattgcttccctttgctcgaagaactcgatcttagtgatcccggagagttcatctaccacag 28673433  T
Q  253 tagcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaacgaccaatcacttttc 352  Q
    ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  28673434 tagtttacacgatggtgttgaggctatttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttc 28673533  T
Q  353 cacttgataaacaactggaagcttctcgaagaggttatagtcttttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaa 452  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28673534 catttgataaacaactgtaagcttctcgaagaggttatagtcttttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaa 28673633  T
Q  453 cattgacggtatcaatttccattacttccgaac 485  Q
    |||||||||||||||||||||||||||||||||    
T  28673634 cattgacggtatcaatttccattacttccgaac 28673666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 114 - 502
Target Start/End: Complemental strand, 29021831 - 29021442
Alignment:
Q  114 aaaacattacaactatgacctctctcgcttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgccggaaga 213  Q
    |||||||||| ||| ||||||||||| |||||| |||||||| ||| ||| |||||||| |||||||  | ||||||||||||||||||||||  |||||    
T  29021831 aaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctttgctcgaaga 29021732  T
Q  214 actcgatattagtgatcccagagagttcatctaccacagtagcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaat 313  Q
    ||||||| ||||| ||||   | || ||| ||| | ||||| ||||| | ||||| ||||||||||||||||| ||||||| |||||| |||||||| ||    
T  29021731 actcgatcttagttatcctgtaaagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgat 29021632  T
Q  314 gtctctcgtcatcactacatcaacgaccaatcacttttccacttgataaacaactggaagcttctcgaagaggttatagtcttttcttgtcatagattaa 413  Q
     |||||||||||  ||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||| ||||| |||| |||    
T  29021631 ctctctcgtcattgctatatcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagttattgtcattttttgtcctagaataa 29021532  T
Q  414 ccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaa-cagacaactatgcaattg 502  Q
    ||||  |||||||||||||||||| |||||||||||||| | |||||||||||  ||||||||| |||||| ||||| ||||||||||||    
T  29021531 ccattgcctgcattgcttctgcttaccgcaagagaccaatagtgacggtatcatattccattacctccgaaccagacgactatgcaattg 29021442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 28710026 - 28710118
Alignment:
Q  16 atgaagtagggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatagtgatatgtgtaatgttttaatgatttaagca 108  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||| ||||||||||| || ||| ||||||||||||||    
T  28710026 atgaagtagggtgcaaacagtagtgcattagtaaaactgggtagaaaaagatgtttaaacagtgatatgtggaaggttgtaatgatttaagca 28710118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 28662714 - 28662815
Alignment:
Q  253 tagcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaa--tgtctctcgtcatcactacatcaacgaccaatcacttt 350  Q
    |||||||| | ||||| |||| |||||||||||| |||||||||||||||| ||||||||  | ||||||||||||| ||||||||||||||||||||||    
T  28662714 tagcttactcgatggtttagatgctatttcattgtcacttttcaaactctggaaggttaatctctctctcgtcatcaatacatcaacgaccaatcacttt 28662813  T
Q  351 tc 352  Q
    ||    
T  28662814 tc 28662815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 28662013 - 28662107
Alignment:
Q  148 ccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgccggaagaactcgatattagtgatcccagagagttca 242  Q
    |||||||||||||||||||||  ||||||| ||  ||||| |  |||||||||||||||  |||||||||||| |||||||||||  ||||||||    
T  28662013 ccaccttgcaactctccatagatctgatctttttctcattccctattgcttccctttgctcgaagaactcgatcttagtgatcccgaagagttca 28662107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 41886782 - 41886842
Alignment:
Q  279 tttcattgccacttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaacga 339  Q
    ||||| || |||||||||||||  | ||||||||| ||||| |||||||||||||||||||    
T  41886782 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 41886842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 28532627 - 28532574
Alignment:
Q  331 catcaacgaccaatcacttttccacttgataaacaactggaagcttctcgaaga 384  Q
    ||||||| |||||||||||||||||||| | | |||||| ||||||||| ||||    
T  28532627 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 28532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 28673303 - 28673332
Alignment:
Q  16 atgaagtagggtgcaaacagtagtgcattt 45  Q
    ||||||||||||||||||||||||||||||    
T  28673303 atgaagtagggtgcaaacagtagtgcattt 28673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 114 - 385
Target Start/End: Original strand, 18314660 - 18314930
Alignment:
Q  114 aaaacattacaactatgacctctctcgcttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgccggaaga 213  Q
    |||| ||||||||| ||||||| ||| | |||||  || ||  | |||||||| |||||||||||||| ||||||||||||| ||||||||||  |||||    
T  18314660 aaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcctcattgctgattgtttccctttgctcgaaga 18314759  T
Q  214 actcgatattagtgatcccagagagttcatctaccacagtagcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaat 313  Q
    ||||||  ||||| | |||| |||||| |   | ||    ||||||| ||||||  |||||| | ||||||  | ||||||||||||| | |||||||||    
T  18314760 actcgaccttagttaccccaaagagttaaaaaatcatgaaagcttactcaatggaatagaggttctttcatcac-acttttcaaactccgaaaggttaat 18314858  T
Q  314 gtctctcgtcatcactacatcaacgaccaatcacttttccacttgataaacaactggaagcttctcgaagag 385  Q
     || ||  |||| ||||||||||||| ||||| |||||||||||| | || ||||| |||||||||||||||    
T  18314859 ttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagag 18314930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 254 - 387
Target Start/End: Complemental strand, 32151862 - 32151729
Alignment:
Q  254 agcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaacgaccaatcacttttcc 353  Q
    |||||||||||||| ||||||||| |||||  | ||||||  |||||||| ||||||||| || |  |||||||||| || || || ||||| |||||||    
T  32151862 agcttacacaatggagtagaggctctttcaacggcactttataaactctggaaggttaatctcacaagtcatcactatattaaagatcaatcgcttttcc 32151763  T
Q  354 acttgataaacaactggaagcttctcgaagaggt 387  Q
    ||||| | ||||||||||||||||||||||||||    
T  32151762 acttgttcaacaactggaagcttctcgaagaggt 32151729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 386
Target Start/End: Original strand, 18318805 - 18318937
Alignment:
Q  254 agcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaacgaccaatcacttttcc 353  Q
    ||||||| | |||| ||||||| | |||| ||  |||||| ||||||| | |||||| || || || |||||||||| |||| ||| ||||| ||| |||    
T  18318805 agcttactcgatggagtagaggttctttctttagcactttccaaactccgaaaggttgatctcactggtcatcactatatcaccgatcaatcgcttatcc 18318904  T
Q  354 acttgataaacaactggaagcttctcgaagagg 386  Q
    ||||| | || ||||||||||||||||||||||    
T  18318905 acttgttcaagaactggaagcttctcgaagagg 18318937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 17642962 - 17643069
Alignment:
Q  119 attacaactatgacctctctcgcttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgccggaagaactcg 218  Q
    ||||||||| ||||||||||| ||||||||||| | | || ||||| |||| |||| ||   | |||| |||||||| ||||||||||  ||||||||||    
T  17642962 attacaactttgacctctctcacttgttcccacatgggaaatctccgtagctctgaccttaccctcatcgctgattgtttccctttgctagaagaactcg 17643061  T
Q  219 atattagt 226  Q
    || |||||    
T  17643062 atcttagt 17643069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 12483955 - 12484045
Alignment:
Q  16 atgaagtagggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatagtgatatgtgtaatgttttaatgatttaag 106  Q
    |||| |||||||| ||||||||||||||| |||||||| ||| ||||| || ||||||||||||||||||||| |||||||||||||||||    
T  12483955 atgaggtagggtgtaaacagtagtgcattagtaaaactaggtagaaaaagaggtgtaaatagtgatatgtgtagtgttttaatgatttaag 12484045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 7555064 - 7554953
Alignment:
Q  279 tttcattgccacttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaacgaccaatcacttttccacttgataaacaactggaagcttct 378  Q
    |||||||| |||||| |||||||  || | ||||| |||||   ||| ||||||||||||||  ||||||| | |||||| | || ||||| ||||||||    
T  7555064 tttcattggcactttccaaactcaccaggattaatctctctgaccattactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttct 7554965  T
Q  379 cgaagaggttat 390  Q
    | ||||||||||    
T  7554964 ccaagaggttat 7554953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 23341332 - 23341394
Alignment:
Q  16 atgaagtagggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatagt 78  Q
    ||||||||||||||||||| || | |||| |||||||||||| ||||| || |||||| ||||    
T  23341332 atgaagtagggtgcaaacaataatacattagtaaaactgggtagaaaaggaggtgtaactagt 23341394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 9412006 - 9411885
Alignment:
Q  269 gtagaggctatttcattgccacttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaacgaccaatcacttttccacttgataaacaact 368  Q
    |||||| || |||||||| ||||||||||||||  |||| ||||| ||||| ||||||||||||||||||||  |||||| ||| ||||| | || ||||    
T  9412006 gtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaact 9411907  T
Q  369 ggaagcttctcgaagaggttat 390  Q
    | ||||||||| ||||||||||    
T  9411906 gtaagcttctccaagaggttat 9411885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 532719 - 532582
Alignment:
Q  249 acagtagcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaacgaccaatcact 348  Q
    |||||||||| | | ||||||| ||| || |||||||  |||||||||||||| ||||||||||| | |||  |||| ||||||||||||||||||| ||    
T  532719 acagtagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgct 532620  T
Q  349 tttccacttgataaacaactggaagcttctcgaagagg 386  Q
    |||||||||| | || || || ||||||||||| ||||    
T  532619 tttccacttgttcaaaaattgtaagcttctcgaggagg 532582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 119 - 390
Target Start/End: Original strand, 8186386 - 8186657
Alignment:
Q  119 attacaactatgacctctctcgcttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgccggaagaactcg 218  Q
    ||||||||| ||||||| ||| | |||||| || ||| | || || ||||||||||  ||||| |||| || ||||| || ||||| |  ||||||||||    
T  8186386 attacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcg 8186485  T
Q  219 atattagtgatcccagagagttcatctaccacagtagcttacacaatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatgtctc 318  Q
    || | ||| | || | |||||||| | | | ||||| |||     |||| || |||||| |||||||| |||||||||||||  ||||||||||| | ||    
T  8186486 atctcagtaaccctaaagagttcaacaatctcagtatcttctttgatggagttgaggctctttcattggcacttttcaaacttcgcaaggttaatctatc 8186585  T
Q  319 tcgtcatcactacatcaacgaccaatcacttttccacttgataaacaactggaagcttctcgaagaggttat 390  Q
    |  |||| |||| ||||||||| |||  ||||| |||||| |||| || || |||| |||||||||||||||    
T  8186586 taatcataactatatcaacgacaaattgctttttcacttgttaaagaattgtaagcatctcgaagaggttat 8186657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 2367988 - 2368049
Alignment:
Q  172 tgatctcttcttcattgctgattgcttccctttgccggaagaactcgatattagtgatccca 233  Q
    |||||||||||||||||||||||| |||||||| |  ||||||||||| || ||| ||||||    
T  2367988 tgatctcttcttcattgctgattgtttccctttactcgaagaactcgacatcagttatccca 2368049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 2373554 - 2373598
Alignment:
Q  172 tgatctcttcttcattgctgattgcttccctttgccggaagaact 216  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||    
T  2373554 tgatctcttcttcattgctgattgtttccctttgctcgaagaact 2373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 5106639 - 5106684
Alignment:
Q  172 tgatctcttcttcattgctgattgcttccctttgccggaagaactc 217  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||    
T  5106639 tgatctcttcttcattgctgattgtttccctttactcgaagaactc 5106684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 2518956 - 2518924
Alignment:
Q  172 tgatctcttcttcattgctgattgcttcccttt 204  Q
    |||||||||||||||||||||||| ||||||||    
T  2518956 tgatctcttcttcattgctgattgtttcccttt 2518924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 7308413 - 7308365
Alignment:
Q  289 acttttcaaactctgcaaggttaatgtctctcgtcatcactacatcaac 337  Q
    ||||||||||||| ||||||| ||| ||||||||||||  |||||||||    
T  7308413 acttttcaaactccgcaaggtaaatctctctcgtcatcggtacatcaac 7308365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 12124568 - 12124536
Alignment:
Q  172 tgatctcttcttcattgctgattgcttcccttt 204  Q
    |||||||||||||||||||||||| ||||||||    
T  12124568 tgatctcttcttcattgctgattgtttcccttt 12124536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 11781252 - 11781163
Alignment:
Q  19 aagtagggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatagtgatatgtgtaatgttttaatgatttaagca 108  Q
    ||||||| |||||||| ||||||||| |||||||||||| |||||||| || ||| |||| || | |||| ||||||||||||| |||||    
T  11781252 aagtaggttgcaaacactagtgcattagtaaaactgggtagaaaatgaggtataactagtaatctatgtagtgttttaatgattcaagca 11781163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 21508954 - 21508871
Alignment:
Q  25 ggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatagtgatatgtgtaatgttttaatgatttaagca 108  Q
    |||||||||| ||||||||| |||||||||||| |||||  | ||| ||||||| || ||  ||||||||||| ||||||||||    
T  21508954 ggtgcaaacaatagtgcattagtaaaactgggtagaaaagaaggtgcaaatagtaatttgaataatgttttaaagatttaagca 21508871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 13930351 - 13930264
Alignment:
Q  19 aagtagggtgcaaacagtagtgcatttgtaaaactgggttgaaaatgatgtgtaaatagtgatatgtgtaatgttttaatgatttaag 106  Q
    ||||| |||||||| ||||||||||| |||||| | ||| |||||  | ||||||||| | || |||||| |||||||||||||||||    
T  13930351 aagtaaggtgcaaatagtagtgcattagtaaaatttggtagaaaagcaggtgtaaataataatttgtgtagtgttttaatgatttaag 13930264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University