View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_high_21 (Length: 466)

Name: NF21580_high_21
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_high_21
NF21580_high_21
[»] chr3 (3 HSPs)
chr3 (19-458)||(49733911-49734350)
chr3 (189-442)||(36288992-36289245)
chr3 (180-288)||(42689409-42689517)
[»] chr4 (7 HSPs)
chr4 (60-458)||(51216193-51216591)
chr4 (136-437)||(51159909-51160210)
chr4 (136-310)||(51149046-51149220)
chr4 (136-427)||(29933829-29934120)
chr4 (137-310)||(51202609-51202782)
chr4 (174-286)||(29936954-29937066)
chr4 (232-286)||(51199978-51200032)
[»] chr1 (2 HSPs)
chr1 (180-277)||(38566424-38566521)
chr1 (177-288)||(38525276-38525387)
[»] chr2 (2 HSPs)
chr2 (177-287)||(5823503-5823613)
chr2 (177-287)||(5766110-5766220)


Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 49734350 - 49733911
Alignment:
Q  19 attcaatgtctgtgtgactgtttcatagtttgcaacaaacatgtgaattccaatatttcaaataactagctatttgtgtagcatggcttatgagattctg 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49734350 attcaatgtctgtgtgactatttcatagtttgcaacaaacatgtgaattccaatatttcaaataactagctatttgtgtagcatggcttatgaggttctg 49734251  T
Q  119 aattgttgaaaaacaacatatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734250 aattgttgaaaaacaacatatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaaga 49734151  T
Q  219 gccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734150 gccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattga 49734051  T
Q  319 gggtggacagaaccaccattgtggtggctcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaagg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734050 gggtggacagaaccaccattgtggtggctcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaagg 49733951  T
Q  419 aaagcatgaaacgttgctcaacaagagtggtacctatgct 458  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49733950 aaagcatgaaacgttgctcaacaagagtggtacctatgct 49733911  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 189 - 442
Target Start/End: Original strand, 36288992 - 36289245
Alignment:
Q  189 ggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaa 288  Q
    ||||||||||| |||||||||||||||||||| ||| | |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  36288992 ggacagaagcagcgtgtggcaattgcaagagcaatattgaagaatccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtccgaaa 36289091  T
Q  289 aagtggttcatgatgcacttgatagattgagggtggacagaaccaccattgtggtggctcatagactatctaccataaagggttcaaattcaattgcagt 388  Q
    |||| ||||| |||||||| ||| || | | ||| ||| ||||||| ||| | ||||| || ||  |||| || || |||||| || ||| |||||||||    
T  36289092 aagtagttcaggatgcactggatcgagttatggttgaccgaaccacaattatagtggcacacaggttatccactattaagggtgcagatttaattgcagt 36289191  T
Q  389 ggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgttgctcaacaa 442  Q
    ||| || ||||| || |||  |||||||||||| |||||||| ||| |||||||    
T  36289192 ggtgaagaatggggtcattacagagaaaggaaatcatgaaacattgatcaacaa 36289245  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 42689517 - 42689409
Alignment:
Q  180 ctttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctg 279  Q
    ||||| ||||||||||||||| |  | || ||||| ||| || || | ||||| |||  ||||||||| || |||||||| |||||||| || |||||||    
T  42689517 ctttcgggaggacagaagcaaagaatagccattgccagaaccttactaaagaagccagcaatattactccttgatgaagcaacaagtgctctcgatgctg 42689418  T
Q  280 agtctgaaa 288  Q
    |||| ||||    
T  42689417 agtccgaaa 42689409  T

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Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 60 - 458
Target Start/End: Original strand, 51216193 - 51216591
Alignment:
Q  60 tgtgaattccaatatttcaaataactagctatttgtgtagcatggcttatgagattctgaattgttgaaaaacaacatatgcaggggtatgacacaatag 159  Q
    |||||||| ||||||||||||||||||||||  | ||  ||||| |||| ||| ||||||||| | |||||| ||||||||||||||||||| |||||||    
T  51216193 tgtgaattgcaatatttcaaataactagctacctatgatgcatgccttacgaggttctgaattctagaaaaataacatatgcaggggtatgatacaatag 51216292  T
Q  160 taggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagc 259  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||    
T  51216293 taggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattactactagatgaggc 51216392  T
Q  260 cacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccaccattgtggtggctcatagactatct 359  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||     
T  51216393 cacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatca 51216492  T
Q  360 accataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgttgctcaacaagagtggtacctatgct 458  Q
    || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |  ||| |||||||| |||| |||||||||    
T  51216493 acaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcacctatgct 51216591  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 136 - 437
Target Start/End: Original strand, 51159909 - 51160210
Alignment:
Q  136 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 235  Q
    |||||||||| |||||||| |||||||| |||||||| || ||| | || || ||||||||||| ||||||||||||||| |||| ||||| ||||||||    
T  51159909 atatgcagggctatgacacgatagtaggtgagagaggaattcaattatccgggggacagaagcagcgtgtggcaattgcacgagctatagtgaagaatcc 51160008  T
Q  236 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccacc 335  Q
    || |||| || ||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||  |  | | ||||||  |||| ||     
T  51160009 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacgaca 51160108  T
Q  336 attgtggtggctcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgttgc 435  Q
    ||  | ||||| |||||  |||| || || || ||| || ||| ||| ||||| ||||| ||||| ||||| | |||||||||||| |||||| ||||||    
T  51160109 ataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatgaagcgttgc 51160208  T
Q  436 tc 437  Q
    ||    
T  51160209 tc 51160210  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 136 - 310
Target Start/End: Original strand, 51149046 - 51149220
Alignment:
Q  136 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 235  Q
    ||||| |||| |||||||| |||||||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||    
T  51149046 atatgtagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc 51149145  T
Q  236 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttga 310  Q
    || |||| || ||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||    
T  51149146 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttga 51149220  T

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Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 136 - 427
Target Start/End: Complemental strand, 29934120 - 29933829
Alignment:
Q  136 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 235  Q
    |||||||||| |||||||| |||||||| |||||||| || ||| | || || ||||||||||| || |||||||||||||||||  | || ||||||||    
T  29934120 atatgcagggctatgacacgatagtaggcgagagaggaattcaattatccgggggacagaagcagcgggtggcaattgcaagagcgttggtgaagaatcc 29934021  T
Q  236 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccacc 335  Q
     | |||| || ||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||  |  | | ||||||| |||| ||     
T  29934020 gaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttgactgtgttatggtggaccgaacaaca 29933921  T
Q  336 attgtggtggctcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatga 427  Q
    ||  | || ||||||||  |||| || ||||||||| || ||| ||||||||| ||||| ||||| |||||   |||||||||||| |||||    
T  29933920 ataatagtagctcataggttatcgactataaagggtgcagatttaattgcagtcgttaagaatggtgtgatatcagagaaaggaaaacatga 29933829  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 137 - 310
Target Start/End: Original strand, 51202609 - 51202782
Alignment:
Q  137 tatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcca 236  Q
    ||||||||| ||||| ||| ||||||| ||||||||  | ||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||    
T  51202609 tatgcagggttatgatacagtagtaggagagagaggagttcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca 51202708  T
Q  237 agaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttga 310  Q
    | |||| || ||||||||||||| || ||||||||||||||||||||||| || ||||| || |||||||||||    
T  51202709 aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttga 51202782  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 29937066 - 29936954
Alignment:
Q  174 atacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttg 273  Q
    |||||||| ||||||||||| |||||| | || |||||||||||||| ||  | ||  | |||||||| ||||| || |||||||| |||||||| ||||    
T  29937066 atacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcttacttcttgatgaagctacaagtgcccttg 29936967  T
Q  274 atgctgagtctga 286  Q
    |||| || |||||    
T  29936966 atgcagaatctga 29936954  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 51199978 - 51200032
Alignment:
Q  232 atccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctga 286  Q
    |||||||||||||||| || |||||||| |||||||| ||||||||||| |||||    
T  51199978 atccaagaatattacttctcgatgaagctacaagtgcgcttgatgctgaatctga 51200032  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 38566521 - 38566424
Alignment:
Q  180 ctttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgc 277  Q
    |||||||| || |||||||| ||  | || ||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  38566521 ctttctggtgggcagaagcagcgcattgccattgcaagagcaatacttaagaatccaagaattttacttctagatgaagctacaagtgcacttgatgc 38566424  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 38525387 - 38525276
Alignment:
Q  177 caactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatg 276  Q
    ||||| ||||| ||||||||||| ||  | || ||||||||||| ||  ||||||||||||||||  |||| || |||||||| ||||||||||||||||    
T  38525387 caactgtctggtggacagaagcagcgcattgcgattgcaagagcaatccttaagaatccaagaattctacttcttgatgaagctacaagtgcacttgatg 38525288  T
Q  277 ctgagtctgaaa 288  Q
    | || |||||||    
T  38525287 cagaatctgaaa 38525276  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 5823503 - 5823613
Alignment:
Q  177 caactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatg 276  Q
    ||||||||||| ||||| |||||| |  | ||||||||||| |||||| | ||||||||||||||  | || || |||||||| ||||||||| | ||||    
T  5823503 caactttctggtggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgcattggatg 5823602  T
Q  277 ctgagtctgaa 287  Q
    |||||||||||    
T  5823603 ctgagtctgaa 5823613  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 5766110 - 5766220
Alignment:
Q  177 caactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatg 276  Q
    ||||||||||| ||||| |||||| |  | |||||||| || || ||| | ||||| ||||||||  | || || |||||||| ||||||||| | ||||    
T  5766110 caactttctggtggacaaaagcaaagaattgcaattgctagggcaatattgaagaacccaagaatccttcttctcgatgaagcaacaagtgcattggatg 5766209  T
Q  277 ctgagtctgaa 287  Q
    |||||||||||    
T  5766210 ctgagtctgaa 5766220  T

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