View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_high_37 (Length: 308)
Name: NF21580_high_37
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 21384559 - 21384306
Alignment:
| Q |
1 |
atattgcgttaagataaaatgatgcaattttattcgtgtatccaatttatctaaggttgggaaaaggtgcatggggcaaaatatttgtcacattgtgcaa |
100 |
Q |
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| T |
21384559 |
atattgcgttaagataaaatgatgcaattttattcgtgtgtccaaattacctaaggttgagataaggtgcatggggcaacatatttgtcactttgtgcaa |
21384460 |
T |
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| Q |
101 |
attagaattaaaaccattcatgtcggtaagaatgtaaccattacaaatcactttcnnnnnnngaaccgtgtttaattcaaactttaatttttctttattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
21384459 |
attagaattaaaaccattcatgtcggtaagaatgtaaccattacaaatcactttcaaaaaaagaaccgtgtttaattcaaacttcaatttttctttattt |
21384360 |
T |
|
| Q |
201 |
gttgatacaaaaacaacgaaattttatagaacacgttgtcataaatatgaatat |
254 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21384359 |
gttgatacaaaaacaacgaaattttatagaacaggttgtcataaatatgaatat |
21384306 |
T |
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