View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_high_43 (Length: 266)
Name: NF21580_high_43
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 24059933 - 24059702
Alignment:
| Q |
18 |
gtgaatgcctttattttactagttatatatacagtatagacaatagataacaccaacactattattattgattattacaatggaggatgttaaaagtaat |
117 |
Q |
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| T |
24059933 |
gtgaatgcctttatttcactagttatatata--gtatagacaatagataacaccaacactgttattattgataattacaatggaggatgttaaaagtaat |
24059836 |
T |
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| Q |
118 |
tcatcagcacaaatgatttacatt-tgcccttcatgagcacaacattgcatgactagagaatcaccaatggttctaagtaattcatcactcccaaagaaa |
216 |
Q |
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| T |
24059835 |
tcatcagcacaaatgatttacattatgccctccatgagcacaacattgcatgactagagagtcactaatggttccaa-taattcatcactcccaaagaaa |
24059737 |
T |
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| Q |
217 |
tatcttacaacaaatggttacaaatatatcctctg |
251 |
Q |
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| T |
24059736 |
tatcttacaacaaatggttataaatatatcctctg |
24059702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 24065520 - 24065452
Alignment:
| Q |
153 |
agcacaacattgcatgactagagaatcaccaatggttctaagtaattcatcactcccaaagaaatatctta |
223 |
Q |
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| T |
24065520 |
agcacgacattgcatgactaga--atcaccaattgttccaattaagtcaccactcccaaagaaatatctta |
24065452 |
T |
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