View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_high_54 (Length: 236)
Name: NF21580_high_54
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 6664716 - 6664796
Alignment:
| Q |
139 |
ataatttccacactccaaattcttaccattcaaaacaagacaaaccccactttcaagacttaacaaattaacgtacacact |
219 |
Q |
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| T |
6664716 |
ataatttccacactccaaattcttaccaatcaaaacaagacaaaccccactttcaagacttaacaaattaacgtacacact |
6664796 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 6664668 - 6664720
Alignment:
| Q |
17 |
aatatttcactcctcacaagtcttcttgtgcctacatcacaacacattataat |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6664668 |
aatatttcactcctcacaagtcttcttgtgcctacatcacaacacattataat |
6664720 |
T |
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