View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_high_59 (Length: 220)

Name: NF21580_high_59

Description: NF21580

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21580_high_59

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 165; E-Value: 2e-88

Query Start/End: Original strand, 1 - 220

Target Start/End: Original strand, 43179698 - 43179918

Alignment:

Q	1	aaattaggctcaccactctctgttt-ctctactttttcttttatccttgagccaatctatattgtgtgtttcttgtcttgtcttgtagatgatttacttg	99	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43179698	aaattaggctcacgactctctattttctctactttttcttttgtcctttggccaatctatattgtgtgtttcttgtcttgtcttggagatgatttacttg	43179797	T

Q	100	tatctatctatttatttgtctatttttgttggtagatagcagaaatgataataatgattaagaattcaaacacaattgactaagatggggtttgaacccc	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	43179798	tatctatctatttatttgtctatttttgttggtagatagccgaaatgataataataattaagaattcaaacacaattgactgagatggggtctgaacccc	43179897	T

Q	200	aatcacaacttctaattcatc	220	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|
T	43179898	aatcacgacttctagttcatc	43179918	T

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Target: chr4; HSP #2

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 120 - 210

Target Start/End: Original strand, 43173551 - 43173643

Alignment:

Q	120	tatttttgttggtagatagcagaaatgataataatgattaagaattcaaacaca--attgactaagatggggtttgaaccccaatcacaactt	210	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43173551	tattttttttggtaggtagacgaaatgataataataattaggaactcacacacacaattgaatgagttggggtttgaaccccaatcacaactt	43173643	T

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