View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_high_60 (Length: 220)
Name: NF21580_high_60
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 22495665 - 22495481
Alignment:
| Q |
12 |
ccaagaatatttctagtctaacaccagcaattgcaaactgagttttcttaattagtattgtaatgcaattgtcgtgtatgtattataataagagtagtga |
111 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22495665 |
ccaaaaatatttctagtctaacaccaacaattgcaaactgagttttctta----gtattgtaatgcaattgtcgtgtatgtattataataagagtagtga |
22495570 |
T |
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| Q |
112 |
tgtttaatgccacgaaatatactttaatgaaatgcaagaatgtcgatttttcttgttatattattggtttgtccaaaactttaaatctgttttt |
205 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
22495569 |
tgtttaataccacgaaatacactttaatgaaatgcaagaatgtcgatttttcttg-----ttattggtttgtccaaaacttcaaatctgttttt |
22495481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 22528075 - 22527961
Alignment:
| Q |
91 |
gtattataataagagtagtgatgtttaatgccacgaaatatactttaatgaaatgcaagaatgtcgatttttcttgttatattattggtttgtccaaaac |
190 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
22528075 |
gtattgtaataagagtagtgatttttaatgccacgaaatacactttaatgaaatgcaagaatctcgatttttcttgttatattattggttggtctaaaac |
22527976 |
T |
|
| Q |
191 |
tttaaatctgttttt |
205 |
Q |
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||||||||||||||| |
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| T |
22527975 |
tttaaatctgttttt |
22527961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 22513923 - 22513818
Alignment:
| Q |
94 |
ttataataagagtagtgatgtttaatgccacgaaatatactttaatgaaatgcaagaatgtcgatttttcttgttatattattggtttgtccaaaacttt |
193 |
Q |
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|||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22513923 |
ttataataagagtagtgatgtttaatcccacgaattacactttaatgaaatgcaggaatgtcgatttttcttgttatattattggttggtccaaaacttc |
22513824 |
T |
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| Q |
194 |
aaatct |
199 |
Q |
| |
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|||||| |
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| T |
22513823 |
aaatct |
22513818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 22602691 - 22602587
Alignment:
| Q |
101 |
aagagtagtgatgtttaatgccacgaaatatactttaatgaaatgcaagaatgtcgatttttcttgttatattattggtttgtccaaaactttaaatctg |
200 |
Q |
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||||||||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||||||||||| || ||||| |||||||| | ||||||| |
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| T |
22602691 |
aagagtagtgatgtttaatgccacgaattacactttaataaaatgtaagaatgttgatttttcttgttatactactggttggtccaaaagtccaaatctg |
22602592 |
T |
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| Q |
201 |
ttttt |
205 |
Q |
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||||| |
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| T |
22602591 |
ttttt |
22602587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 22515058 - 22514973
Alignment:
| Q |
12 |
ccaagaatatttctagtctaacaccagcaattgcaaactgagttttcttaattagtattgtaatgcaattgtcgtgtatgtattataata |
101 |
Q |
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|||| ||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
22515058 |
ccaataatatttctagtctaacaccaacaattgctaattgagttttctta----gtattgtaatgcaattgtcgtgtatgttttataata |
22514973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 22528125 - 22528076
Alignment:
| Q |
12 |
ccaagaatatttctagtctaacaccagcaattgcaaactgagttttctta |
61 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22528125 |
ccaataatatttctagtctaacaccaataattgcaaactgagttttctta |
22528076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 22602754 - 22602705
Alignment:
| Q |
12 |
ccaagaatatttctagtctaacaccagcaattgcaaactgagttttctta |
61 |
Q |
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|||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
22602754 |
ccaataatatttctagtctaacaccaacaattgcaatctgagttttctta |
22602705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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