View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_high_8 (Length: 625)

Name: NF21580_high_8
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_high_8
NF21580_high_8
[»] chr6 (8 HSPs)
chr6 (245-625)||(2428942-2429320)
chr6 (1-142)||(2428700-2428841)
chr6 (319-469)||(2425665-2425810)
chr6 (6-139)||(2425390-2425521)
chr6 (587-623)||(2603209-2603245)
chr6 (587-623)||(2679933-2679969)
chr6 (8-70)||(3593130-3593192)
chr6 (587-623)||(2647490-2647526)
[»] chr2 (1 HSPs)
chr2 (6-68)||(34312396-34312458)
[»] chr5 (1 HSPs)
chr5 (6-70)||(39664196-39664260)
[»] chr3 (1 HSPs)
chr3 (7-70)||(19598492-19598555)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 245 - 625
Target Start/End: Original strand, 2428942 - 2429320
Alignment:
Q  245 ggttgtgtatgttttgtaacattaaaagaagggttgtaaattgtaatatctttatgtttgaatggagataaagtaatttactccacatagtattgcagta 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428942 ggttgtgtatgttttgtaacattaaaagaagggttgtaaattgtaatatctttatgtttgaatggagataaagtaatttactccacatagtattgcagta 2429041  T
Q  345 aattttacattagtttgtttattcttgtgtccattgtccactaaatacattaaaaacaaaatgttttctagcatcttaaaagtttgtcctaaactannnn 444  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        
T  2429042 aattttacattagtttgtttatt---gtgtccattgtccactaaatacagtaaaaacaaaatgttttctagcatcttaaaagtttgtcctaaactatttt 2429138  T
Q  445 nnnaatccttgctcttttgctgtccccacaactctcaactcccc-actctatctttccctataaatcctcacatctctcaaagcacaaatatatagtgac 543  Q
       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  2429139 tttaatccttgctcttttgctgtccccacaactctcaactcccccactctatctttccctataaatccccacaactctcaaagcacaaatatatagtgac 2429238  T
Q  544 tagaaaatcatatcatatcattagaaaagaaaagggggccactatgggtagtggtgatcagaaaaatgtttccattaatgat 625  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2429239 tagaaaatcatatcatatcattagaatagaaaagggggccactatgggtggtggtgatcagaaaaatgtttccattaatgat 2429320  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2428700 - 2428841
Alignment:
Q  1 caacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatttnnnnnnntaatattaacatcaaacgcaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  2428700 caacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaattttaaaaaataatattaacatcaaacgcaac 2428799  T
Q  101 gatggttgacagaaagagaaagatggaagatatgacacctgg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2428800 gatggttgacagaaagagaaagatggaagatatgacacctgg 2428841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 319 - 469
Target Start/End: Original strand, 2425665 - 2425810
Alignment:
Q  319 aatttactccacatagtattgcagtaaattttacattagtttgtttattcttgtgtccattgtccactaaatacattaaaaacaaaatgttttctagcat 418  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||     |||||||||||||||||||||| | ||||||| |||| |||||||||||    
T  2425665 aatttattccacatagtattgaagtaaatttcacattagtttgttt-----tgtgtccattgtccactaaataaagtaaaaactaaatattttctagcat 2425759  T
Q  419 cttaaaagtttgtcctaaactannnnnnnaatccttgctcttttgctgtcc 469  Q
     |||||||||||| ||||||||       ||||||||||||| ||||||||    
T  2425760 tttaaaagtttgttctaaactatttttttaatccttgctcttctgctgtcc 2425810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 2425390 - 2425521
Alignment:
Q  6 ctccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatttnnnnnnntaatattaacatcaaacgcaacgatgg 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||          |||||||||||||| || ||||||     
T  2425390 ctccaacacaagcacaacaacaacatcaaagtgtgctatcttttcaacaaaacttgttaataattaagaaaat--atattaacatcaaatgcgacgatga 2425487  T
Q  106 ttgacagaaagagaaagatggaagatatgacacc 139  Q
    ||||| ||||||| ||||||||||||||||||||    
T  2425488 ttgacggaaagaggaagatggaagatatgacacc 2425521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 623
Target Start/End: Complemental strand, 2603245 - 2603209
Alignment:
Q  587 atgggtagtggtgatcagaaaaatgtttccattaatg 623  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2603245 atgggtggtggtgatcagaaaaatgtttccattaatg 2603209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 623
Target Start/End: Complemental strand, 2679969 - 2679933
Alignment:
Q  587 atgggtagtggtgatcagaaaaatgtttccattaatg 623  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2679969 atgggtggtggtgatcagaaaaatgtttccattaatg 2679933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 3593192 - 3593130
Alignment:
Q  8 ccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt 70  Q
    ||||||||| |||||||||| || |||||||   ||||||||||||  |||||||||||||||    
T  3593192 ccaacacaaacacaacaacattagcaaagtgcattatcttttcaacaaaacttgttaaaaatt 3593130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 623
Target Start/End: Complemental strand, 2647526 - 2647490
Alignment:
Q  587 atgggtagtggtgatcagaaaaatgtttccattaatg 623  Q
    |||||| || |||||||||||||||||||||||||||    
T  2647526 atgggtggtagtgatcagaaaaatgtttccattaatg 2647490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 34312458 - 34312396
Alignment:
Q  6 ctccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaa 68  Q
    ||||||||||||||||||||||||| || ||||  ||||||||||||   |||||||||||||    
T  34312458 ctccaacacaagcacaacaacaatagcatagtgcactatcttttcaatataacttgttaaaaa 34312396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 39664196 - 39664260
Alignment:
Q  6 ctccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt 70  Q
    ||||||||||| |||||||| | || |||||||  |||||||||||||  |||||||||||||||    
T  39664196 ctccaacacaaacacaacaatagtagcaaagtgcactatcttttcaacaaaacttgttaaaaatt 39664260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 19598492 - 19598555
Alignment:
Q  7 tccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt 70  Q
    ||||||| || ||||||||||||| |||| |   ||||||||||||| ||||||||||||||||    
T  19598492 tccaacataaacacaacaacaatagcaaaatacactatcttttcaacacaacttgttaaaaatt 19598555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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