View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_11 (Length: 608)
Name: NF21580_low_11
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 56187463 - 56187809
Alignment:
| Q |
11 |
cacagacataaaagattggatgcaaatttagcattagacttggnnnnnnngatagcaataagaggaagagacattgaagagacagagtcagaaagggtga |
110 |
Q |
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| T |
56187463 |
cacagacataaaagattggatgcaaatttagcattagacttggaaaaaaagatagcaataagaggaagagacattgaagagacagagtcagaaagggtga |
56187562 |
T |
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| Q |
111 |
gaggagtcaaagatgaaagtagttcgagctacaagttggaagttgttgatcctaaaa-aatcataagaagggcaagaagtaaatcagaacatagcatgaa |
209 |
Q |
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| T |
56187563 |
gaggagtcaaagatgaaagtagttcgagctacaagttggaagttgttgatcctaaaaaaatcataagaagggcaagaagtaaatcagaacatagcatgaa |
56187662 |
T |
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| Q |
210 |
aaaggcagatagagataaataattattaatctttgaagaattcaaagaaaatcacagttcaaaccacctcccttatatgcagtttgtagcttcaattctt |
309 |
Q |
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| T |
56187663 |
aaaggcagatagagataaataattattaatctttgaagaattcaaagaaaatcacagttcaaaccacctcccttatatgcagtttgtagcttcaattctt |
56187762 |
T |
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| Q |
310 |
annnnnnnaccttttcacagatgtaacaactaaataatccctgtact |
356 |
Q |
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| T |
56187763 |
atttttttaccttttcacagatgtaataactaaataatccctgtact |
56187809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 354 - 593
Target Start/End: Original strand, 56187830 - 56188063
Alignment:
| Q |
354 |
actagggattttttattttgaattaannnnnnnnncattgttcatgtttgagaggaagaaagatagacaatatgtattgctagaggacatatcaattgca |
453 |
Q |
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| T |
56187830 |
actagggattttttattttgaattaatttttttttcattgttcatgtttgagaggaagaaagatagacaatatgtattgctagaggacatatcaattgca |
56187929 |
T |
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| Q |
454 |
taggtaatttcatattttcagggagactcagattaaagtgcggtccacaaccccgcaaccgcaaccacaatttaaaatcatacatggtgatcagcatgct |
553 |
Q |
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| T |
56187930 |
taggtaatttcatattttcagggagactcagattaaagtgcggtccaacacc------ccgcaaccacaatttaaaatcatacatggtgatcagaatgct |
56188023 |
T |
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| Q |
554 |
cccaaaccaaaatgtcattgaaggtatcattgatgaaaat |
593 |
Q |
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| T |
56188024 |
cccaaaccaaaatgtcattgaaggtatcattgatgaaaat |
56188063 |
T |
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