View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_15 (Length: 509)
Name: NF21580_low_15
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 6 - 492
Target Start/End: Complemental strand, 49426632 - 49426145
Alignment:
| Q |
6 |
gtcgaagaaaattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagc |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49426632 |
gtcgaagaaaattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagc |
49426533 |
T |
|
| Q |
106 |
ttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49426532 |
ttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagaactcaaaacatatagagagttattattatg |
49426433 |
T |
|
| Q |
206 |
cccaagggcctcccctatatgtgaagttgtgatcgattgcaagcaaggttctatgtaagtagcagttcttctattcacttctactttgcaactgttaggt |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49426432 |
cccaagggcctcccctatatgtgaagttgtgatcgattgcaagcgaggttctatgtaagtagcagttcttctattcacttctactttgcaactgttaggt |
49426333 |
T |
|
| Q |
306 |
ttgatggtttgaatagtgaaccttgatgctcttgaattttgtatcagttcacaagtttaagaaaaattatcctttaactttagaccnnnnnnnnnnnact |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49426332 |
ttgatggtttgaatagtgaaccttgatgctcttgaattttgtatcagttcacaagtttaagaaaaattatcctttaactttagacc-ttttttttttact |
49426234 |
T |
|
| Q |
406 |
tgttcattacttcaacaaaatctatgttatcca--nnnnnnnngttagttgtttgctaaattctgattccatgaatgaccacatgatag |
492 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49426233 |
tgttcattacttcaacaaaatctatgttatccattttttttttgttagttgtatgctaaattctgattccatgaatgaccacatgatag |
49426145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 91 - 379
Target Start/End: Complemental strand, 49432788 - 49432497
Alignment:
| Q |
91 |
gccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatag |
190 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| || ||| || || |
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| T |
49432788 |
gccaagaaagtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatccattgtggtaaagacttcgaaatattaag |
49432689 |
T |
|
| Q |
191 |
agagttattattatgcccaagggcctcccctatatgtgaagttgtgatcgattgcaagc-aaggttctatgtaag--tagcagttcttctattcacttct |
287 |
Q |
| |
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||||||| | ||||||| ||||| || ||||||||||||||| | | ||| | || || ||||||||| |||||||||||||||| |||||| |
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| T |
49432688 |
agagttactcttatgccatagggcttctcctatatgtgaagttattacttattaaatgcaaacagcctatgtaagtatagcagttcttctattaacttct |
49432589 |
T |
|
| Q |
288 |
actttgcaactgttaggtttgatggtttgaatagtgaaccttgatgctcttgaattttgtatcagttcacaagtttaagaaaaattatcctt |
379 |
Q |
| |
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||||||||||||||||||| || |||||| | ||||||||||||| ||||||| |||||||| || ||||||| | |||||||||||||| |
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| T |
49432588 |
actttgcaactgttaggttcgacagtttgagttgtgaaccttgatgttcttgaactttgtatcggtgcacaagtccaggaaaaattatcctt |
49432497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 17641281 - 17641083
Alignment:
| Q |
10 |
aagaaaattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttct |
109 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| || ||| |||||||| | ||| ||| |||| | || | || ||| | ||||||||| | |||||||| |
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|
| T |
17641281 |
aagaaaattgggtggacccaatatttgttccgcaatgtttttcattacaccttaaaatttgcaaagttctaaacttcataggccaagaaggcgagcttct |
17641182 |
T |
|
| Q |
110 |
attggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatgccc |
208 |
Q |
| |
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|||||||| | | ||||| |||||||||| ||||||||||||||||||||| |||| || |||| ||||||| | | ||||||||||| || ||||| |
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|
| T |
17641181 |
attggcaagaaacattctgaagaatgcaaaagttttgcaaaccatgaaaatacattgcagtgaagacctcaaaatagaaagagagttattcttgtgccc |
17641083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 49415938 - 49416098
Alignment:
| Q |
3 |
gatgtcgaagaaaattgggaggacc---caatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaa |
99 |
Q |
| |
|
|||||| | |||||||||||||||| |||||| |||||| || ||||||||||| ||||| |||||||| | || |||| ||||| ||| ||||| |
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| T |
49415938 |
gatgtccatgaaaattgggaggaccacccaatatttgttccacaaagtctttcattacaacttaaaacttgcaaacttctgaacttcttaggcgaagaag |
49416037 |
T |
|
| Q |
100 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaat |
160 |
Q |
| |
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| |||||||||||||||| | | ||| | |||||||| ||||||||||||||||||||||| |
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|
| T |
49416038 |
gcgagcttctattggcaagatacattttgaagaatgctagagttttgcaaaccatgaaaat |
49416098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 49445393 - 49445331
Alignment:
| Q |
100 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca |
162 |
Q |
| |
|
|||||||||| |||||||| ||||| | |||||||||||||||||||||||||||| ||||| |
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|
| T |
49445393 |
gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca |
49445331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 43362340 - 43362472
Alignment:
| Q |
100 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttatt |
199 |
Q |
| |
|
|||||||| ||||||||| | ||||| | ||||||||||||||||||| ||||||| ||||| |||| || | || |||||| | | ||||| || | |
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|
| T |
43362340 |
gtgagcttttattggcaatatatattgtgaagaatgcaagagttttgc-aaccatggaaatctattgcagtgacgaactcaaactagaaagagaattgtc |
43362438 |
T |
|
| Q |
200 |
attatgcccaagggcctcccctatatgtgaagtt |
233 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| |
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| T |
43362439 |
cttatgtccaagggcctctcctacatgtgaagtt |
43362472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 1965543 - 1965709
Alignment:
| Q |
48 |
ctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgc |
147 |
Q |
| |
|
||||||||| ||||| |||||||| |||| | || ||||| |||||||||||||||||||| ||||||| | |||||||||||||| ||| |||||||| |
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|
| T |
1965543 |
ctttcattacaacttaaaacttgccaaattcttaatttctttggccaagaaagtgagcttcttttggcaagatatattctaaagaatacaaaagttttgc |
1965642 |
T |
|
| Q |
148 |
aaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatgcccaagggc |
214 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||| || ||||||||| | ||||||| |||||| |
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|
| T |
1965643 |
aaaccatgaaaatcgattgtggtgaagacttcaaaatattaagagagttactcttatgccaaagggc |
1965709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 41662563 - 41662531
Alignment:
| Q |
129 |
aagaatgcaagagttttgcaaaccatgaaaatc |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
41662563 |
aagaatgcaagagttttacaaaccatgaaaatc |
41662531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 25457808 - 25457687
Alignment:
| Q |
93 |
caagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagag |
192 |
Q |
| |
|
||||||||||||| ||| ||||||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||| |||| |||||| || |||| |
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|
| T |
25457808 |
caagaaagtgagcatcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatcgattgtggtgaagacttcaaaatattaagag |
25457709 |
T |
|
| Q |
193 |
agttattattatgcccaagggc |
214 |
Q |
| |
|
||||| | ||||||| |||||| |
|
|
| T |
25457708 |
agttactcttatgccaaagggc |
25457687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 986036 - 985984
Alignment:
| Q |
109 |
tattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatc |
161 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
986036 |
tattagcaagacatattctaaagaatgcaagaattttacaaaccatgaaaatc |
985984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 996783 - 996744
Alignment:
| Q |
121 |
atattctaaagaatgcaagagttttgcaaaccatgaaaat |
160 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
996783 |
atattctaaagaatgcaagacttttacaaaccatgaaaat |
996744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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