View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_low_18 (Length: 473)

Name: NF21580_low_18
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_low_18
NF21580_low_18
[»] chr3 (18 HSPs)
chr3 (1-89)||(28001690-28001778)
chr3 (324-413)||(28147091-28147180)
chr3 (352-413)||(28182880-28182941)
chr3 (135-253)||(28183037-28183158)
chr3 (342-413)||(28521252-28521323)
chr3 (126-228)||(28052722-28052826)
chr3 (126-228)||(28063147-28063251)
chr3 (366-413)||(28052307-28052354)
chr3 (2-79)||(28052919-28052998)
chr3 (2-79)||(28063344-28063423)
chr3 (420-458)||(28000563-28000601)
chr3 (87-122)||(28001612-28001647)
chr3 (423-458)||(28179566-28179601)
chr3 (420-455)||(28470736-28470771)
chr3 (420-454)||(28158128-28158162)
chr3 (324-381)||(28131575-28131632)
chr3 (324-376)||(28052450-28052502)
chr3 (324-376)||(28062875-28062927)
[»] chr1 (1 HSPs)
chr1 (95-205)||(34416197-34416312)
[»] scaffold0257 (1 HSPs)
scaffold0257 (361-413)||(16808-16860)
[»] chr5 (1 HSPs)
chr5 (87-173)||(27906820-27906907)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28001778 - 28001690
Alignment:
Q  1 atattcttaacttgatcactatataattgtaatgaatctaggaaaactaattatactttttgtttatggtgatgatatttttgttacat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  28001778 atattcttaacttgatcactatataattgtaatgaatctaggaaaactaattatactttttgtttatgttgatgatattgttgttacat 28001690  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 28147180 - 28147091
Alignment:
Q  324 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 413  Q
    |||||||| |||| |||| | | || |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28147180 aatgtaacaaaaagaaagcactacagtatttaattaaattaatattgttatttaattttcaacactccaacctttttgtttttcaatctg 28147091  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 28182941 - 28182880
Alignment:
Q  352 tttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 413  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28182941 tttaattaaattaatattgttatttaattttcaacaccccaacccttttgtttttcaatctg 28182880  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 28183158 - 28183037
Alignment:
Q  135 aattgaggtagcttactcaaagaaaggaatttttatctc----agaaaatatctgtttgaccttttgcaggaaacataaaaacttggaagcaaacctaca 230  Q
    |||| |||||| | |||||||||||||||||||||||||    ||||||||  ||||||||||||||| ||||||| ||||| |||||||||||||||      
T  28183158 aattaaggtagttcactcaaagaaaggaatttttatctcttgtagaaaatacttgtttgaccttttgctggaaacagaaaaaattggaagcaaacctaag 28183059  T
Q  231 actatttttcagttaaattaata 253  Q
    | |  ||||||||||||||||||    
T  28183058 agt-gttttcagttaaattaata 28183037  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 413
Target Start/End: Original strand, 28521252 - 28521323
Alignment:
Q  342 tattgcattatttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 413  Q
    |||| ||||||||||||  ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  28521252 tattacattatttaattaaattaatattgtcatttacttttcaacactccaacacttttgtttttcaatctg 28521323  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 28052826 - 28052722
Alignment:
Q  126 atttctcaaaattgaggtagcttactcaaagaaaggaatttttatctc--agaaaatatctgtttgaccttttgcaggaaacataaaaacttggaagcaa 223  Q
    |||||| |||||||||||| || |||||||||||||||||| ||||||    ||||||| ||||||||||||||  ||||| | |||||||| |||||||    
T  28052826 atttcttaaaattgaggtaactcactcaaagaaaggaatttgtatctcgtgaaaaatatgtgtttgaccttttggtggaaaaagaaaaactttgaagcaa 28052727  T
Q  224 accta 228  Q
    |||||    
T  28052726 accta 28052722  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 28063251 - 28063147
Alignment:
Q  126 atttctcaaaattgaggtagcttactcaaagaaaggaatttttatctc--agaaaatatctgtttgaccttttgcaggaaacataaaaacttggaagcaa 223  Q
    |||||| |||||||||||| || |||||||||||||||||| ||||||    ||||||| ||||||||||||||  ||||| | |||||||| |||||||    
T  28063251 atttcttaaaattgaggtaactcactcaaagaaaggaatttgtatctcgtgaaaaatatgtgtttgaccttttggtggaaaaagaaaaactttgaagcaa 28063152  T
Q  224 accta 228  Q
    |||||    
T  28063151 accta 28063147  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 28052354 - 28052307
Alignment:
Q  366 tattgttatttaattttcaacactccaacccttttgtttttcaatctg 413  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  28052354 tattgttatttaattttcgacactccaacccttttgtttttcaatctg 28052307  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 28052998 - 28052919
Alignment:
Q  2 tattcttaacttgatc--actatataattgtaatgaatctaggaaaactaattatactttttgtttatggtgatgatatt 79  Q
    |||||||||||||| |  ||| |||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||    
T  28052998 tattcttaacttgagcgcactttatatttgtaatgaatctagaaaaactaattgaactttttgtttatgttgatgatatt 28052919  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 28063423 - 28063344
Alignment:
Q  2 tattcttaacttgatc--actatataattgtaatgaatctaggaaaactaattatactttttgtttatggtgatgatatt 79  Q
    |||||||||||||| |  ||| |||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||    
T  28063423 tattcttaacttgagcgcactttatatttgtaatgaatctagaaaaactaattgaactttttgtttatgttgatgatatt 28063344  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 28000601 - 28000563
Alignment:
Q  420 aatatatgttgacttaaaatcatcaagtttagattttca 458  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28000601 aatatatgttgacttaaaatcatcaagtttagattttca 28000563  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 28001647 - 28001612
Alignment:
Q  87 cattagagtttgaaatgaaggaccttgaacgactca 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  28001647 cattagagtttgaaatgaaggaccttgaacgactca 28001612  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 423 - 458
Target Start/End: Complemental strand, 28179601 - 28179566
Alignment:
Q  423 atatgttgacttaaaatcatcaagtttagattttca 458  Q
    ||||||||||||||||||||||||||||||||||||    
T  28179601 atatgttgacttaaaatcatcaagtttagattttca 28179566  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 455
Target Start/End: Original strand, 28470736 - 28470771
Alignment:
Q  420 aatatatgttgacttaaaatcatcaagtttagattt 455  Q
    |||||||||| |||||||||||||||||||||||||    
T  28470736 aatatatgtttacttaaaatcatcaagtttagattt 28470771  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 454
Target Start/End: Complemental strand, 28158162 - 28158128
Alignment:
Q  420 aatatatgttgacttaaaatcatcaagtttagatt 454  Q
    |||||||| ||||||||||||||||||||||||||    
T  28158162 aatatatgctgacttaaaatcatcaagtttagatt 28158128  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 28131632 - 28131575
Alignment:
Q  324 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttatttaattt 381  Q
    ||||||||||||| |||||| | ||||||||||||  ||||| |||| ||||||||||    
T  28131632 aatgtaaccaaaagaaagtactacattatttaattaaattaacattgatatttaattt 28131575  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 28052502 - 28052450
Alignment:
Q  324 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttattt 376  Q
    |||| |||||||| |||||| | ||||||||||||  ||||||||||||||||    
T  28052502 aatgcaaccaaaagaaagtagtacattatttaattaaattaatattgttattt 28052450  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 28062927 - 28062875
Alignment:
Q  324 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttattt 376  Q
    |||| |||||||| |||||| | ||||||||||||  ||||||||||||||||    
T  28062927 aatgcaaccaaaagaaagtagtacattatttaattaaattaatattgttattt 28062875  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 34416312 - 34416197
Alignment:
Q  95 tttgaaatgaaggaccttgaacgactcaagtatttc-tcaaaattgaggtagcttactcaaagaaaggaatttttatctc----agaaaatatctgtttg 189  Q
    ||||||||||| ||| |||||| ||||||||||||| | | ||||||||||||| ||||||| |||||||| | ||||||    ||||| ||| ||||||    
T  34416312 tttgaaatgaatgacattgaacaactcaagtatttctttagaattgaggtagctcactcaaataaaggaatatgtatctctcatagaaagtatgtgtttg 34416213  T
Q  190 accttttgcaggaaac 205  Q
    ||||||||| ||||||    
T  34416212 accttttgccggaaac 34416197  T

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Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 16860 - 16808
Alignment:
Q  361 attaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 413  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  16860 attaatattgttatttaattttgaacactccaacccttctgtgtttcaatctg 16808  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 27906907 - 27906820
Alignment:
Q  87 cattagagtttgaaatgaaggaccttgaacgactcaagtatttctcaa-aattgaggtagcttactcaaagaaaggaatttttatctc 173  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||    |||||||||||| ||||||||| ||| ||||||| ||||    
T  27906907 cattagagtttgagatgaaggaccttgagcaactcgagtatttcttgggaattgaggtagcctactcaaagcaagaaatttttctctc 27906820  T

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