View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_2 (Length: 767)
Name: NF21580_low_2
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 217 - 752
Target Start/End: Complemental strand, 43090992 - 43090454
Alignment:
| Q |
217 |
atacacacacattgaagaaatttagcagaagaagaagttgatatatttgttataactataagggaagggaagattaactaggaatgcattcaagagtgtg |
316 |
Q |
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| T |
43090992 |
atacacacacattgaagaaatttagcagaagaagaagttgatatatttgttataactataagggatgggaagattaactaggaatgcattcaagagtgtg |
43090893 |
T |
|
| Q |
317 |
tcagatattttaggacactgaa-----gtatctatcttttttaaggacaagtcgctcatagggagggacagatgaatgaatgaacattgaacatacatat |
411 |
Q |
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| T |
43090892 |
tcagatattttaggacactgaactgaagtatctatcttttttaaggacaagtcgctcatagggagggacagatgaatgaatgaacattgaacatacatat |
43090793 |
T |
|
| Q |
412 |
aatttcactgtgggcctcttctgtttcacttctcttctttttctgagttccatggacaattttgggtctttcactttccaccacttcttcttttacaact |
511 |
Q |
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| T |
43090792 |
aatttcactgtgggcctcttctgtttcacttctcttctttttctgagttccatggacaattttgggtctttcactttccaccacttcttcttttacaact |
43090693 |
T |
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| Q |
512 |
tttgaactgctttacctttcaagaatttgattcttccaaggtgattcttttttactacatnnnnnnnttctatttgtttaatagtaacataacatggttt |
611 |
Q |
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| T |
43090692 |
tttgaactgctttacctttcaagaatttgattcttccaaggtgtttcttttttactacat--aaaaattctatttgtttaatagtaacataacatggttt |
43090595 |
T |
|
| Q |
612 |
gttactttgtaagttgttcatgtgtgtaatgtataaagccccacaatgcaatgtcacactctatacattatatacttcattattttaatgttgtttgatt |
711 |
Q |
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| T |
43090594 |
gttactttgtaagttgttcatgtgtgtaatgtataaagccccacaatgcaatgtcacactctatatattatatacttcattattttaatgttgtttgatt |
43090495 |
T |
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| Q |
712 |
ttgctttccatgcttcaccccatgttccagaggtgtgtttt |
752 |
Q |
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| T |
43090494 |
ttgctttccatgcttcaccccatgttccagaggtgtgtttt |
43090454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 43091246 - 43091052
Alignment:
| Q |
22 |
gtatgtattaggtagtagtagggtgttggagatggaaaaaggaacaatgttgattcatctaaaaagctatcttttattggttcagctttaatgcataaaa |
121 |
Q |
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| T |
43091246 |
gtatgtattaggtagtagtagggtgttggagatggaaaaaggaacaatgttgattcatctaaaaagctatcttttattggttcagctttaatgcataaaa |
43091147 |
T |
|
| Q |
122 |
gtaacagaaccatattcagaagaaagaaagatgaattattcgatttctttttacgagtcacacaatcacaaactgtttctttgatttagggagtt |
216 |
Q |
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| T |
43091146 |
gtaacagaaccatattcagaagaaagaaagatgaattattcgatttctttttacgagtcacacaatcacaaactttttctttgatttagggagtt |
43091052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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