View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_20 (Length: 468)
Name: NF21580_low_20
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 48 - 455
Target Start/End: Complemental strand, 8134202 - 8133794
Alignment:
| Q |
48 |
gaataatgtacataatcatgatcgcatgagaataataaccaacaataatcaaatccatagaaattctttttcacatcaatatttcaataacagatgcatt |
147 |
Q |
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| T |
8134202 |
gaataatgtatataatcatgatcgcatgagaataataaccaacaataatcaaatccatagaaattctttttcacatcaatatttcaataacagatgcatt |
8134103 |
T |
|
| Q |
148 |
atgtaacnnnnnnnnnnnnnnnnnnn-taatcatgtcacgttcacaaataaaagccataaattaagatcaatattttgaaggcaaaataagaataaacaa |
246 |
Q |
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| T |
8134102 |
atgtaacaaaacaaaaaggaaaaaaaataatcatgtcacgttcacaaataaaagccataaattaagatcaatattttgaaggcaaaataagaataaacaa |
8134003 |
T |
|
| Q |
247 |
aaaatagtttgatgtataattaaaaggtactaataatataccagtttcttggattcattgcccctatggaggatatcgttccatgcatcaacgttgtgaa |
346 |
Q |
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| T |
8134002 |
aaaatagtttgatgtataattaaaaggtactaataatataccagtttcttggattcattgcccctatggaggatatcgttccatgcatcaacgttgtgaa |
8133903 |
T |
|
| Q |
347 |
cgccaattacttgtccctcttctgatgaacctgccattatctcctatannnnnnngtttaagattttgattttaatcttaatttcaaagaaatgtaacaa |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133902 |
cgccaattacttgtccctcttctgatgaacctgccattatctcttatatttttttgtttaagattttgattttaatcttaatttcaaagaaatgtaacaa |
8133803 |
T |
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| Q |
447 |
attgtatct |
455 |
Q |
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| T |
8133802 |
attgtatct |
8133794 |
T |
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