View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_22 (Length: 419)
Name: NF21580_low_22
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 4444672 - 4444982
Alignment:
| Q |
20 |
tgagtcacaaaatgggataacccttggatgcataggcaatagcattgtctcaaa--------aacaaaagacctacccgactgctaacgatcagtaagta |
111 |
Q |
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| T |
4444672 |
tgagtcacaaaaagggataacccttggatgcataggcaatagcattgtctcaaaaacccaaaaacaaaagacttacccgactgctaacgatcagtaagta |
4444771 |
T |
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| Q |
112 |
tcgaaatcaaccgggaaaaagggattcttgaatgttttttcattcatttcaaaaagccacgtttgcggctgctttgttgacaaaagagtaatttgttaga |
211 |
Q |
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| T |
4444772 |
tcgaaatcaactgggaagaagggattcttgaatgttttttcagtcatttc-aaaagccacgtttgcggctgcgttgttgacaaaagagtaatttgttaga |
4444870 |
T |
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| Q |
212 |
ggttgcgaagttacacagttagagtcaccggacacacagaggcctcttctgtttattgtcgttaatgatcattgctaattccttgtttgtcaacatcatc |
311 |
Q |
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| T |
4444871 |
ggttgcaaagttacacagttagagtcaccggacacac-gaggcctcttctgtttattgtcgttaatgatcattgc---ttccttgtttgtcaacatcatc |
4444966 |
T |
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| Q |
312 |
cctctaagaaactcac |
327 |
Q |
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| T |
4444967 |
cctctaagaaactcac |
4444982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 4445016 - 4445064
Alignment:
| Q |
355 |
aaccatagtcttgtttccttccattgtttgatttttctgtcttgttcat |
403 |
Q |
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| T |
4445016 |
aaccatagtcttgtttccttccattgtttgatttttctgtgttgttcat |
4445064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 37558610 - 37558480
Alignment:
| Q |
96 |
taacgatcagtaagtatcgaaatcaaccgggaaaaagggattcttgaatgttttttcattcatttcaaaaagccacgtttgcggctgctttgttgacaaa |
195 |
Q |
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|||||| || |||||||| |||||||| ||||| ||||||| ||||| || ||||||| |||||| ||| |||| | | ||||| ||||||||||| |
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| T |
37558610 |
taacgaacaataagtatccaaatcaactgggaagaagggatccttgagtgatttttcagtcattttgaaa-gccaactccacagctgcattgttgacaaa |
37558512 |
T |
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| Q |
196 |
agagtaatttgttagaggttgcgaagttacac |
227 |
Q |
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| T |
37558511 |
agaataatttggtagaggttgcgaagttacac |
37558480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 37558719 - 37558671
Alignment:
| Q |
28 |
aaaatgggataacccttggatgcataggcaatagcattgtctcaaaaac |
76 |
Q |
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| T |
37558719 |
aaaaagggataacccttggatgcataggcaatagcattacctcaaaaac |
37558671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 34257758 - 34257710
Alignment:
| Q |
28 |
aaaatgggataacccttggatgcataggcaatagcattgtctcaaaaac |
76 |
Q |
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|||| ||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
34257758 |
aaaacgggataaccgttggatgcgtaggcaatagcattgcttcaaaaac |
34257710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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