View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_23 (Length: 409)
Name: NF21580_low_23
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 136 - 405
Target Start/End: Original strand, 16263042 - 16263303
Alignment:
| Q |
136 |
aaatagttgtcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggcctgtttaccttgagtccttgaaattgttctcatcctca |
235 |
Q |
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| T |
16263042 |
aaatagttgtcatgttcagcaagcagcttcaattttcttgcaattgctttaccttcaggggcatgtttaccttgac--------attgttctcatcctca |
16263133 |
T |
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| Q |
236 |
cccaatacctgcaatttctaacacacaattaagaaaaaatatgtcagtttctttgatggtagtttcaccactgagacttggcctagttaattatgtggat |
335 |
Q |
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| T |
16263134 |
cccaatacttgcaatttccaacacacaattaagaaaaaatatgtaagtttctttgatggtagtttcactaccgagacttggcctaattaattctgtggat |
16263233 |
T |
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| Q |
336 |
gacataaaagttaatgtagtgtcacaattacattctaactggaagcaaaaaacacagataaaatatgcaa |
405 |
Q |
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||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
16263234 |
cacaaaaaagttaatgcagtgtcacaattacattctaaccggaagcaaaaagcacagataaaatatgcaa |
16263303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 14015955 - 14015903
Alignment:
| Q |
145 |
tcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggc |
197 |
Q |
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| T |
14015955 |
tcatgttcagcaagtagcttcaattctcttgcaattgctttatcttcaggggc |
14015903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 15563309 - 15563257
Alignment:
| Q |
145 |
tcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggc |
197 |
Q |
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| T |
15563309 |
tcatgttcagaaagtagcttcaattctcttgaaattgctttatcttcaggggc |
15563257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 15575956 - 15575904
Alignment:
| Q |
145 |
tcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggc |
197 |
Q |
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|||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||| |
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| T |
15575956 |
tcatgttcagaaagtagcttcaattctcttgaaattgctttatcttcaggggc |
15575904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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