View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_24 (Length: 397)
Name: NF21580_low_24
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_24 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 175 - 397
Target Start/End: Complemental strand, 28216551 - 28216330
Alignment:
| Q |
175 |
gatatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggctttgaagttagatactgcc |
273 |
Q |
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| T |
28216551 |
gatatggaaattgaggatttgaagaaaagtataaatacgctcaatgggcaatccgcagcaaa-ggatatggaaattgaggatttgaagttagatactgcc |
28216453 |
T |
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| Q |
274 |
tttcgctataaagatggttttgataatgccatagaacaagttcatgtcctatttccatcgttcgatttgtcagtggctgttgctatgaagtccgtggttg |
373 |
Q |
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| T |
28216452 |
tttcgctatcaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttggatttgtcagaggctgacgctatgaagtccgtggttg |
28216353 |
T |
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| Q |
374 |
atggaaaactcgtattaagttttt |
397 |
Q |
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| T |
28216352 |
atggaaaactagta-taagttttt |
28216330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 28216797 - 28216528
Alignment:
| Q |
1 |
atagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaaaaaga |
100 |
Q |
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| T |
28216797 |
atagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggagaaaaaga |
28216698 |
T |
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| Q |
101 |
atgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatc---------cgatatggaaattgagga |
191 |
Q |
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| T |
28216697 |
ctgaaaataacaaggcatttgaggaggaggttgttggcttgaagaaaagtgtagatgcgctcaaggggaaatcggccgcgaaggatatggaaattgagga |
28216598 |
T |
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| Q |
192 |
tttgaag-aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggctttgaag |
261 |
Q |
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| T |
28216597 |
tttgaagaaaagaatagacacgctcaaggggcaatccgcagc-gaaggatatggaaattgaggatttgaag |
28216528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 28237669 - 28237400
Alignment:
| Q |
1 |
atagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaaaaaga |
100 |
Q |
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| T |
28237669 |
atagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacaaactgctctgactcagttggagaaaaaga |
28237570 |
T |
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| Q |
101 |
atgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatcc---------gatatggaaattgagga |
191 |
Q |
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| T |
28237569 |
ctgaaaataacaaggcgtttgaggaggaggttgttggcttgaagaaaagtgtagatacgctcaaggggctatccgcttcgaaggatgtggaaattgagga |
28237470 |
T |
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| Q |
192 |
tttgaag-aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggctttgaag |
261 |
Q |
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| T |
28237469 |
tttgaagaaaagtacagatacgctcaagaggcaatccacaac-caaggatatggaaattgaggatttgaag |
28237400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28232840 - 28232579
Alignment:
| Q |
1 |
atagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaaaaaga |
100 |
Q |
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| T |
28232840 |
atagccaatgatactcttggggatatgaagaagcacatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggagaaaaaga |
28232741 |
T |
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| Q |
101 |
atgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatcc---------gatatggaaattgagga |
191 |
Q |
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| T |
28232740 |
atgaaaataacaaagcgtttgaggaggaggaggttggcttgaagaaaagtgtagatatgctaaaggggctatccattgcgaaggatgtggaaattgagga |
28232641 |
T |
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| Q |
192 |
tttgaag-aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgagg |
253 |
Q |
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| T |
28232640 |
tttgaagaaaagtgtagatatgctcaaggggctatccgctgc-gaaggatgtggaaattgagg |
28232579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 138 - 388
Target Start/End: Complemental strand, 28232577 - 28232318
Alignment:
| Q |
138 |
cttgaagaaaagtgtagatatgctcaaggggcaatccg---------atatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatcc |
227 |
Q |
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||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||| |||| ||||| |||| ||||||||| |
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| T |
28232577 |
cttgaaggaaagtgtagatatgctcaaggggaaatccgcagcgaaggatatagaaattgaggaattgaagaaaagtatggatacgttcaaggggcaatcc |
28232478 |
T |
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| Q |
228 |
gcagcaaaaggatatggaaattgaggctttgaagttagatactgcctttcgctataaagatggttttgataatgccatagaacaagttcatgtcctattt |
327 |
Q |
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| T |
28232477 |
gcagcaaa-ggatatggaaattgaggatttgaaggtagacgctgccttgcgctatcaagatggttttgataaggccatagaacaagttcacatcctattt |
28232379 |
T |
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| Q |
328 |
ccatcgttcgatttgtcagtggctgttgctatgaagtccgtggttgatggaaaactcgtat |
388 |
Q |
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| T |
28232378 |
ccatcatttgatttttcggaggctgacgctatgaagtctgtggttgatggaaaactagtat |
28232318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 175 - 397
Target Start/End: Complemental strand, 28237423 - 28237202
Alignment:
| Q |
175 |
gatatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggctttgaagttagatactgcc |
273 |
Q |
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| T |
28237423 |
gatatggaaattgaggatttgaagaaaagcatagatacgctcaaggggcaatccgcag-aaaaggatatggaaattgaggagttgaagatagacgctgca |
28237325 |
T |
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| Q |
274 |
tttcgctataaagatggttttgataatgccatagaacaagttcatgtcctatttccatcgttcgatttgtcagtggctgttgctatgaagtccgtggttg |
373 |
Q |
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| T |
28237324 |
tttcgctatcaaggtggttttgacaaggccatagaacaagttcacatcctatttccgttgtttgatttgtcggaggctgacgctatgaagtctgtggttg |
28237225 |
T |
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| Q |
374 |
atggaaaactcgtattaagttttt |
397 |
Q |
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| T |
28237224 |
atggaaaactagta-taagttttt |
28237202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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