View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_26 (Length: 385)
Name: NF21580_low_26
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_26 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 33325626 - 33325259
Alignment:
| Q |
18 |
ggttggtcactatttcccatgcaacgtgctttgctgacacacctccaaagatatcctgcaataacctcaaaagttgagtaaggttttgtcctagggacat |
117 |
Q |
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| T |
33325626 |
ggttggtcattattttccatgcaacgtgctttgctgacacacctccaaagatatcctgcaataacctcaaaagttgagtaaggttttgtcttagggacat |
33325527 |
T |
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| Q |
118 |
ctttggaggtgggttgaaaactcacgcgagagttaacatttttcttaagtattgaaacttgttctcgcgtgagttttaaaatagcaacactcacttctct |
217 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
33325526 |
ctttggaggtgggttgaaaattcacacgagagttaacatttttcttaagtattgaaacttgttctcgcgtgagtttcacaatagcaacactcacttctct |
33325427 |
T |
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| Q |
218 |
agtgttgcccaaatcatgatctacctgaataggaggcatgtcaaactcatgatgatgccgatgtaaggatgaagaatgtgtgagtttgcgtgaattcaac |
317 |
Q |
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| T |
33325426 |
agtgttgcccaaatcatgatctacctgaataggaggcgtgtcaaactcatgatgatgccgatgtaaggatgaagaatgtgtgagtttgcgtgaattcaac |
33325327 |
T |
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| Q |
318 |
atagttcgatcgtgacacggaaactcacttggatccaagttctctccacgcgccaacttagcccatgc |
385 |
Q |
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| T |
33325326 |
atagttcgatcgtgacacggaaactcacttggatccaaattctctccacgcgccaacttagcccatgc |
33325259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 33339128 - 33339492
Alignment:
| Q |
18 |
ggttggtcactatttcccatgcaacgtgctttgctgacacacctccaaagatatcctgcaataacctcaaaagttgagtaaggttttgtcctagggacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33339128 |
ggttggtcactatttcccatgcaacgtgctttgctgacacacctccaaagatatcctgcaataacctcaaaagttgagtaaggttttgtcctagggacat |
33339227 |
T |
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| Q |
118 |
ctttggaggtgggttgaaaactcacgcgagagttaacatttttcttaagtattgaaacttgttctcgcgtgagttttaaaatagcaacactcacttctct |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
33339228 |
ctttggaggtgggttgaaaactcatgcgagagttaacatttttcttaagtattgaaacttgttcttgtgtgagttttaaaatagcaacactcacttctct |
33339327 |
T |
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| Q |
218 |
agtgttgcccaaatcatgatctacctgaataggaggcatgtcaaactcatgatgatgccgatgtaaggatgaagaatgtgtgagtttgcgtgaattcaac |
317 |
Q |
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||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
33339328 |
agtgttgcccacatcacgacctacctgaataggaggcatgtcaaactcatgatgatgtcgatgtaaggatggagaatgtatgagtttgtatgaattcaac |
33339427 |
T |
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| Q |
318 |
atagttcgatcgtgacacggaaactcacttggatccaagttctctccacgcgccaacttagccca |
382 |
Q |
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| T |
33339428 |
acggttcgatcgtgacacggaaattcacttgaatccaaattctctccacgcgccaacttagccca |
33339492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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