View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_28 (Length: 384)
Name: NF21580_low_28
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_28 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 371
Target Start/End: Complemental strand, 11151562 - 11151212
Alignment:
| Q |
21 |
aaaactcaccccacaaccagtatcaattgcagttctaactgacccatctttaattcctgggatcagatcttgcattaaatcaacatattcaccaacacca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11151562 |
aaaactcaccccacaaccagtatcaattgcagttctaactgacccatctttaattcctgggatcagatcttgcattaaatcaacatattcaccaacacca |
11151463 |
T |
|
| Q |
121 |
ttaggaaacatagtacctccaccaggaaattgaaatttctccccttcctttatcaaccaatgctgattagacttctgcttgttaatccaatcatatggca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11151462 |
ttaggaaacatagtacctccaccaggaaattgaaatttctccccttcctttatcaaccaatgctgattagacttctgcttgttaatccaatcatatggca |
11151363 |
T |
|
| Q |
221 |
cattcctgtcatttattcaagtaacacaattttaaaaattgaacaatgtatatatcaatgtagcaagcaacttaaaatcaatgcaaattataattatttc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11151362 |
cattcctgtcatttattcaagtaacacaattttaaaaattgaacaatgtatatatcaatgtagcaagcaacttaaaatcaatgcaaattataattatttc |
11151263 |
T |
|
| Q |
321 |
aacttataaatcataaatcatgtattgcatacctgtaccaacattcatctc |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11151262 |
aacttataaatcataaatcatgtattgcatacctgtaccaacattcatctc |
11151212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 30258534 - 30258738
Alignment:
| Q |
24 |
actcaccccacaaccagtatcaattgcagttctaactgacccatctttaattcctgggatcagatcttgcattaaatcaacatattcaccaacaccatta |
123 |
Q |
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|||||||||||||||||||||||| || |||| || | |||||||| ||| ||||||||||||||| ||||||||||||||||| ||| ||||| || |
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| T |
30258534 |
actcaccccacaaccagtatcaatggccgttcgaatagttccatctttcatttctgggatcagatcttccattaaatcaacatatttaccgacaccgttc |
30258633 |
T |
|
| Q |
124 |
ggaaacatagtacctccaccaggaaattgaaatttctccccttcctttatcaaccaatgctgattagacttctgcttgttaatccaatcatatggcacat |
223 |
Q |
| |
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|| ||||||||||||||||||||||| | |||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |
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| T |
30258634 |
gggaacatagtacctccaccaggaaagaggaatttctctccttcctttttcaaccaatgttgattggacttctgtttgttaatccagtcatacggaacat |
30258733 |
T |
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| Q |
224 |
tcctg |
228 |
Q |
| |
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||||| |
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| T |
30258734 |
tcctg |
30258738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 70481 - 70514
Alignment:
| Q |
116 |
caccattaggaaacatagtacctccaccaggaaa |
149 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
70481 |
caccattaggaaacatagtaccaccaccaggaaa |
70514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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