View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_29 (Length: 377)
Name: NF21580_low_29
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 376
Target Start/End: Original strand, 9172556 - 9172923
Alignment:
| Q |
7 |
cttacgatattgttaattttctctatctctttatatcatatatttgatcgattgcaatttttctgtcttagccaaaacggcaaaaactgagaactaggat |
106 |
Q |
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| T |
9172556 |
cttacgatattgttaattttctctatctctttat--catatatttgatcgattgcaatttttctgtcttagacaaaactgcaaaaactgagaactaggat |
9172653 |
T |
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| Q |
107 |
gtactgatttaacataacctagaaattcttacaatcatggcaatatgatatgatgattaatagaagacaaatttggacacgtgattgtaattatctcaaa |
206 |
Q |
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| T |
9172654 |
gtactgatttaacataacctagaaattcttacaatcatggcaatatgatatgatgattaatagaagacaaatttgaacaggtgattgtaattatctcaaa |
9172753 |
T |
|
| Q |
207 |
tagtaatgtaaggactcaaatagtaactatagtgtgctcatttgattcattaataataaagcatattaaaatacttatgaaatattcttttatgctttag |
306 |
Q |
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| T |
9172754 |
tagtaatgtaaggactcgaatagtaaccatcgtgtactcatttgattcattaataataatgcatattaaaatacttatgaaatattcttttatgctttag |
9172853 |
T |
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| Q |
307 |
cttgtatacttgcatctcttgtattcataatcaacactattatacaggtgcaccatttgtaatcgatatt |
376 |
Q |
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| T |
9172854 |
cttgtatacttgcatctcttgtattcataatcaacactattatacaggtgcaccatttgtaatcgatatt |
9172923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 25905157 - 25905011
Alignment:
| Q |
8 |
ttacgatattgttaattttctctatctctttatatcatatatttgatcgattgcaatttttctgtcttagccaaaacggcaaaaactgagaactaggatg |
107 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
25905157 |
ttacgatattgttaattttctctatctctttat--catatatttgatcgattgcaatttttctgtcttagccaaaactgcaaaaaccgagaactaggatg |
25905060 |
T |
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| Q |
108 |
tactgatttaacataacctagaaattcttacaatcatggcaatatgata |
156 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
25905059 |
tactgatttaacgtaacctagaatttcttacaatcatggcaatatgata |
25905011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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