View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_3 (Length: 736)
Name: NF21580_low_3
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 362 - 718
Target Start/End: Complemental strand, 48451404 - 48451041
Alignment:
| Q |
362 |
cacataaactgagtttttgcaaactgtgtttgaaatacagtcagtacaaaaacaagtagtgagacataagttaagtgcagaatatcaaacacatactata |
461 |
Q |
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| T |
48451404 |
cacataaactgagtttttgcaaactgtgtttgaaatacagtcagtacaaaaacaagtagtgagacataagttaagtgcagaatatcaaacacatactata |
48451305 |
T |
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| Q |
462 |
taagagaaattcaaagaacaaaagaactattcaattttaattaataaaatatgagtttctcaacagattctcggcagaagaatccaccatct-------- |
553 |
Q |
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| T |
48451304 |
taagagaaattcaaagaacaaaagaactattcaattttaattaataaaatatgagtttctcaacagattctcggcagaagaatccaccatctgggggggg |
48451205 |
T |
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| Q |
554 |
gggaagcacacatgtaacacatccaagacaaactataacaaatgttggtaatacttgctagttgctacaatgatgaagctatatcaggagtttctaaaca |
653 |
Q |
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| T |
48451204 |
gggaagcacacatgtaacacatccaagacaaactataacaaatgttggtaatacttgctagttgctacaatgatgaagcaatatcaggagtttctaaaga |
48451105 |
T |
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| Q |
654 |
aaaaagagcagcaacggttttatttttatttatttctcatccctttatattacagactaaactct |
718 |
Q |
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| T |
48451104 |
aaaaagagcagcaacggttttatttttatttatttctcatccctttata-tacagactaaactct |
48451041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 48451759 - 48451473
Alignment:
| Q |
6 |
gagatgaatccttgtgagcagttctattttcgttgatagcagctactaacttgtccgcagggttatcagtaattttgactgcaaagttttcataatgtca |
105 |
Q |
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| T |
48451759 |
gagatgaatccttgtgagcagttctattttcgttgatagcagctactaacttgtccgcagggttatcagtaattttgactgcaaagttttcataatgtca |
48451660 |
T |
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| Q |
106 |
cacaaatgttaatttagagaacacacaagtgggtaacagtgaatgcaataaaagaaatttaatcacatagtaaggaaataaatataactatgaggtaggg |
205 |
Q |
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| T |
48451659 |
cacaaatgttaatgtagagaacacacaagtgggtaacagtgaatgcaataaaagaaatttaatcacatagtaaggaaataaatataactatgaggtaggg |
48451560 |
T |
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| Q |
206 |
attcagaatgatagataagttgatatttgagaattttcactttttcagtaagccaaaagtaggctgtttattgtgacgaaagtagcc |
292 |
Q |
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| T |
48451559 |
attcagaatgatagataagttgatatttgagaattttcactttttcagtaagccaaaagtaggctgtttattgtgacgaaagtagcc |
48451473 |
T |
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