View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_31 (Length: 347)
Name: NF21580_low_31
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 40212982 - 40213307
Alignment:
| Q |
17 |
acttataaatttgccgccaagttgtttttataagtaagtgtgttaaaaaattactaacagtgcttatataatgaaattggtttaaataaactcttccaaa |
116 |
Q |
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| T |
40212982 |
acttataaatttgccgccaagttgtttttataagtaagtgtgttaaaaaattactaacagtgcttatataatgaaattggtttaaataaactcttccaaa |
40213081 |
T |
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| Q |
117 |
cactctaaatagtcactagttactaatcaatatgtatgtgcaaagtgctgcaacaaaatgctatacatgttttcaaccaggagtcatacttacatacttt |
216 |
Q |
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| T |
40213082 |
cactctaaatagtcactagttactaatcaatatgtatgtgcaaagtgctgcaacaaaatgttatacatgttttcaaccaagagtcatacttacatacttt |
40213181 |
T |
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| Q |
217 |
gcatcaagcaaaaagaccatatcggtacatgatgcaagacatgaaaattagatacacattcaaaaaaggaaccctatcatctaaatcagtaaaaagccta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40213182 |
gcatcaagcaaaaagaccatatcggtacatgatgcaagacatgaaaattagatacacattcaaaaaaggaaccctatcatctaaatcagtaaaaagccta |
40213281 |
T |
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| Q |
317 |
ggccactggttttcgccctttgcttc |
342 |
Q |
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||||||||||||||||| |||||||| |
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| T |
40213282 |
ggccactggttttcgccttttgcttc |
40213307 |
T |
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