View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_34 (Length: 318)
Name: NF21580_low_34
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 1664328 - 1664030
Alignment:
| Q |
1 |
acatgtccactcgagctagcgagtatttaaacacaaagttgtaatctttaaaccttaagtttgtataattgtaattagtcagagacagacacaattggcc |
100 |
Q |
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| T |
1664328 |
acatgtccactcgagctagcgagtatttaaacacaaagttgtaatctataaaccttgagtttgtataattgtaattagtcagagacagacacaattggcc |
1664229 |
T |
|
| Q |
101 |
gaactccatgatcaaatctcttgtattctctgattgtattttttacttttgaaccagactcgctattccaatacaaacacaaacaacaagtgtgcatgct |
200 |
Q |
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| T |
1664228 |
gaactccatgatcaaatctcttgtattctctgattgtattttttactgttgaaccagactcgctattccaatacaaacacaaacaacaagtgtgcatgct |
1664129 |
T |
|
| Q |
201 |
ctttctagaaagagttacacaacagtttgtaacatgactgacaatttaagtattgtcgattgaccagacaaaccaacatgaatctttttagcatatttt |
299 |
Q |
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| T |
1664128 |
ctttctagaaagagttacacaacagtttgtaacatgactgacaatttaagtattgtcgattgaccagacaaaccaacatgaatctttttagcatatttt |
1664030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 37278080 - 37278117
Alignment:
| Q |
78 |
gtcagagacagacacaattggccgaactccatgatcaa |
115 |
Q |
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| T |
37278080 |
gtcagagacagacacaattggccgaactccatgatcaa |
37278117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 26143681 - 26143640
Alignment:
| Q |
77 |
agtcagagacagacacaattggccgaactccatgatcaaatc |
118 |
Q |
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| T |
26143681 |
agtcagagacagtcacacttgcccgaactccatgatcaaatc |
26143640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 38213649 - 38213616
Alignment:
| Q |
87 |
agacacaattggccgaactccatgatcaaatctc |
120 |
Q |
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| T |
38213649 |
agacacaattggccgaacgccatgatcaaatctc |
38213616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 28026983 - 28026942
Alignment:
| Q |
90 |
cacaattggccgaactccatgatcaaatctcttgtattctct |
131 |
Q |
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| T |
28026983 |
cacaattggccgaactccacgatcaaatatcttgtgttctct |
28026942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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