View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_low_36 (Length: 309)

Name: NF21580_low_36
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_low_36
NF21580_low_36
[»] chr3 (12 HSPs)
chr3 (20-293)||(33397183-33397456)
chr3 (100-293)||(27004908-27005101)
chr3 (226-293)||(36876466-36876533)
chr3 (232-286)||(33093071-33093125)
chr3 (20-69)||(33708401-33708450)
chr3 (100-273)||(36810180-36810353)
chr3 (171-279)||(33708173-33708281)
chr3 (20-71)||(33714265-33714316)
chr3 (130-279)||(33714039-33714188)
chr3 (20-73)||(36876237-36876290)
chr3 (252-292)||(37579968-37580008)
chr3 (20-73)||(36810396-36810449)
[»] chr7 (2 HSPs)
chr7 (199-292)||(18723550-18723643)
chr7 (25-77)||(18723712-18723764)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 33397183 - 33397456
Alignment:
Q  20 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaagaaatatccttacggcatgtaagtgagaaagaattcaaagttgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33397183 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatggagtatgaagaaatatccttacggcatgtaagtgagaaagaattcaaagttgg 33397282  T
Q  120 tctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaa 219  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33397283 tctctgacatattgcagaagcaagaccatcatgtgatagcaaatggcattggaacataaccaactcttgtagaaacacacagttcatacacaatagaaaa 33397382  T
Q  220 aaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaag 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33397383 aaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaag 33397456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 293
Target Start/End: Complemental strand, 27005101 - 27004908
Alignment:
Q  100 gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac 199  Q
    ||||||||||||||||| ||||||||    ||||||||||||| ||||||| ||| ||| || ||||| | ||||||||  || | ||||||||||  ||    
T  27005101 gagaaagaattcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttaggaattggcaatcgaacataaaaacttgttgtagaaacttac 27005002  T
Q  200 agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaag 293  Q
    |||| | ||| | | |||||||    |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  27005001 agttgacacatagttgaaaaaacaaagagtcattaaagtaggaatgaccagagagattaacattgcggagttttgaaagcttttgagtaagaag 27004908  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 36876466 - 36876533
Alignment:
Q  226 gagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaag 293  Q
    |||||||||| |||||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  36876466 gagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttgagtaagaag 36876533  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 33093125 - 33093071
Alignment:
Q  232 ttaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgag 286  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  33093125 ttaacatagaaattacctgagagattaaccttgcggagttttaaaagcttttgag 33093071  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 33708450 - 33708401
Alignment:
Q  20 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaag 69  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  33708450 acaaatcaagacaagttaagcgcttcaaactcatcaatgaatcaatgaag 33708401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 273
Target Start/End: Complemental strand, 36810353 - 36810180
Alignment:
Q  100 gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac 199  Q
    |||| |||||||||||| |||||||| |  ||||||| ||||| |||| |||||| ||| ||| |||| | ||||||||||||||||| || || | |||    
T  36810353 gagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcac 36810254  T
Q  200 agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagtttt 273  Q
    ||||| | |||| |   |||||    || |||| ||  ||||||| ||||||||| ||||||||| ||||||||    
T  36810253 agttcctgcacagttccaaaaacaatgaatcatcaatatagaaattaccagagaggttaaccttgtggagtttt 36810180  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 33708281 - 33708173
Alignment:
Q  171 gaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagt 270  Q
    |||||||| ||||||||| ||||||   ||||||||||| |   |||||||    |||||||| |||||| ||| ||| |||||||||||||| ||||||    
T  33708281 gaacataagcacctcttggagaaacttgcagttcatacatagctgaaaaaacaatgagtcatttacgtaggaattaccggagagattaaccttacggagt 33708182  T
Q  271 tttgaaagc 279  Q
    |||||||||    
T  33708181 tttgaaagc 33708173  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 33714316 - 33714265
Alignment:
Q  20 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagta 71  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  33714316 acaaatcaagacaagttaagcgctttaaactcaccaatgaatcaatgaagta 33714265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 33714188 - 33714039
Alignment:
Q  130 attgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagt 229  Q
    ||||||||||||| |||| || ||| ||   || |||||| | |||||||||||||||  ||||||   ||||||||||| |   |||||||    ||||    
T  33714188 attgcagaagcaataccagcatgtgttatggaacggcatttgtacataaccacctctttgagaaacttgcagttcatacatagctgaaaaaacaacgagt 33714089  T
Q  230 cattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagc 279  Q
    |||| || ||| ||| |||||||||||||||||| ||||||| |||||||    
T  33714088 catttacataggaattaccagagagattaaccttacggagttctgaaagc 33714039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 36876237 - 36876290
Alignment:
Q  20 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg 73  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||  |||||||    
T  36876237 acaaatcaagacaagttaatcccttcaaactccacaatgaatcaacaaagtatg 36876290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 37580008 - 37579968
Alignment:
Q  252 gagattaaccttgcggagttttgaaagcttttgagtgagaa 292  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  37580008 gagattaaccttgcagagttttgaaagcttttgagtaagaa 37579968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 36810449 - 36810396
Alignment:
Q  20 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg 73  Q
    |||||||| |||||||||||| ||||||||||  ||||||||||  ||||||||    
T  36810449 acaaatcatgacaagttaatcccttcaaactccccaatgaatcagcgaagtatg 36810396  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 18723643 - 18723550
Alignment:
Q  199 cagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaa 292  Q
    ||||||||||||| | |||||||    || ||||||| ||||| || |||||| |||||||| |||||||||||||||||| ||||||| ||||    
T  18723643 cagttcatacacagttgaaaaaacaatgaatcattaatgtagatattaccagaaagattaactttgcggagttttgaaagcctttgagtaagaa 18723550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 18723764 - 18723712
Alignment:
Q  25 tcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaaga 77  Q
    |||||||||||||| | ||||||||||  ||||||||||||||||||||||||    
T  18723764 tcaagacaagttaagcgcttcaaactcgccaatgaatcaatgaagtatgaaga 18723712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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