View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_42 (Length: 278)
Name: NF21580_low_42
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 33171293 - 33171046
Alignment:
| Q |
21 |
atacactcaaagaagaaaacaaaataataactgctcttaatagaatcgtttgaagtgttcaattgatttggaatcatgtatagtagatataaccactacc |
120 |
Q |
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| T |
33171293 |
atacactcaaagaagaaaacaaaataataactgctcttaatagaatcgtttgaaacgttcaattgatttggaatcatgtatagtagatataaccactacc |
33171194 |
T |
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| Q |
121 |
tcacgtcaaaataagtgtcattattagaaattagaaacgagaaattaaagtgagaaaccaactacatgaccttttcccacacagaacaatgagattcagt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33171193 |
tcacgtcaaaataagtgtcattattagaaattagaaacgagaaattaaagtgagaaaccaactacatgaccttttcccacacagaacaatgagattcagt |
33171094 |
T |
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| Q |
221 |
aaaagtgtaaaactaaaagcacattttagatataaccaacaagtataa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33171093 |
aaaagtgtaaaactaaaagcacattttagatataaccaacaagtataa |
33171046 |
T |
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