View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_45 (Length: 263)
Name: NF21580_low_45
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 22551793 - 22551562
Alignment:
| Q |
12 |
tcgctagagggctagttagatcagaagaaagcaagcagaaaattggtgctgcagatgatgtttttattggtgatataagagataccgaaagtcttgttcc |
111 |
Q |
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| T |
22551793 |
tcgcaagagggctagttagatcagaagaaagcaagcagaaaattggtgctgcggatgatgtttttattggtgatatcagagataccgaaagtcttgctcc |
22551694 |
T |
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| Q |
112 |
tgcaattcaaggtatagatgctctcataatccttacaagtggagtaccactaatgaaacctggattcgatccaactcaaggaaaaagacccgagttctat |
211 |
Q |
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| T |
22551693 |
tgcaattcaaggtatagatgctctcataatccttacaagtggagtaccactaatgaaacctggattcgatccaactcaaggaaaaagacccgagttctat |
22551594 |
T |
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| Q |
212 |
tttgaagatggtgcataccctgaacaggtact |
243 |
Q |
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| T |
22551593 |
tttgaagatggtgcataccctgaacaggtact |
22551562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 22204292 - 22204384
Alignment:
| Q |
154 |
agtaccactaatgaaacctggattcgatccaactcaaggaaaaagacccgagttctattttgaagatggtgcataccctgaacaggtactatt |
246 |
Q |
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| T |
22204292 |
agtaccactgaggaaacctgggtgtgatccaacccaaggaaaaagacccgagttcgattttgatgatgatgcattccctaaacaggtactatt |
22204384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 22230447 - 22230355
Alignment:
| Q |
154 |
agtaccactaatgaaacctggattcgatccaactcaaggaaaaagacccgagttctattttgaagatggtgcataccctgaacaggtactatt |
246 |
Q |
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| T |
22230447 |
agtaccactgaggaaacctgggtgtgatccaacccaaggaaaaagacccgagttcgattttgatgatgatgcattccctaaacaggtactatt |
22230355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 22251212 - 22251291
Alignment:
| Q |
166 |
gaaacctggattcgatccaactcaaggaaaaagacccgagttctattttgaagatggtgcataccctgaacaggtactat |
245 |
Q |
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| T |
22251212 |
gaaacctaggtttgatccaacccaaggaaaaagacccgaattctgttttgatgatgctgcataccccgaacacgtactat |
22251291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 7293363 - 7293577
Alignment:
| Q |
26 |
gttagatcagaagaaagcaagcagaaaattggtgctgcagatgatgtttttattggtgatataagagataccgaaagtcttgttcctgcaattcaaggta |
125 |
Q |
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| T |
7293363 |
gttagatctgaagaaagcaaacagaaaattggtggtgcagatgatattttccttggggatatcagaaatgccgaaagtattgttcctgcaattcaaggta |
7293462 |
T |
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| Q |
126 |
tagatgctctcataatccttacaagtggagtaccactaatgaaacctggattcgatccaactcaaggaaaaagacccgagttctattttgaagatggtgc |
225 |
Q |
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|||||||||||| || || ||||||| || |||| |||||||||||| || |||||||| |||| ||| || ||||| |||||||| |||||||| |
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| T |
7293463 |
cagatgctctcatcattctcacaagtgctgtcccacaaatgaaacctgggtttgatccaaccaaaggtggaaggcctgagttttattttgatgatggtgc |
7293562 |
T |
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| Q |
226 |
ataccctgaacaggt |
240 |
Q |
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||| || |||||||| |
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| T |
7293563 |
atatcccgaacaggt |
7293577 |
T |
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