View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_46 (Length: 263)
Name: NF21580_low_46
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 201
Target Start/End: Complemental strand, 16441328 - 16441167
Alignment:
| Q |
43 |
cggccacttgcggaaaacattagagaacaaatttattatctcatttgnnnnnnnnnnn--attctcttatcttttccaaatacattcaaacatcaattta |
140 |
Q |
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| T |
16441328 |
cggccacttgcggaaaacattagagaacaaatttattatcacatttgttttttattttttattctcttatcttttccaaatacattcaaacatcaattta |
16441229 |
T |
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| Q |
141 |
ttagtg-ttcttagaagaaacaaattcattacaaaattaagaaaataattacagttatgaaa |
201 |
Q |
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| T |
16441228 |
ttagtggttcttagaagaaacaaattcattacaaaattaagaaaataattacagttatgaaa |
16441167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 16425065 - 16424915
Alignment:
| Q |
43 |
cggccacttgcggaaaacattagagaacaaatttattatctcatttgnnnnnnnnnnnattctcttatcttttccaaatacattcaaacatcaatttatt |
142 |
Q |
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| T |
16425065 |
cggccacgtgcggaaaacattagagaacaaattcatt--ctcatttgttttttc----attctcttatcttttccaaatacattaaagcataaatttatt |
16424972 |
T |
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| Q |
143 |
agtg----------ttcttagaagaaacaaattcattacaaaattaagaaaataatt |
189 |
Q |
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| T |
16424971 |
agtggttaaattggttcttagaagaaacaaattcattacaaaattaagaaaataatt |
16424915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 16441091 - 16441141
Alignment:
| Q |
196 |
atgaaaacttgtaaaatcatcattcaatgatataagttgcagtcgaagtca |
246 |
Q |
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| T |
16441091 |
atgaaaacttgtaaaatcatcattcaatgatataagttgcagtcgaggtca |
16441141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 15522687 - 15522645
Alignment:
| Q |
150 |
ttagaagaaacaaattcattacaaaattaagaaaataattaca |
192 |
Q |
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| T |
15522687 |
ttagaagaaacaaattcattacataataatgaaaataattaca |
15522645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 29866073 - 29866118
Alignment:
| Q |
156 |
gaaacaaattcattacaaaattaagaaaataattacagttatgaaa |
201 |
Q |
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| T |
29866073 |
gaaacaaattcattgcaaaattatgaaaagaattacaggtatgaaa |
29866118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 49583289 - 49583248
Alignment:
| Q |
151 |
tagaagaaacaaattcattacaaaattaagaaaataattaca |
192 |
Q |
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| T |
49583289 |
tagaagaaataaattcattactaaattatgaaaataattaca |
49583248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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