View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_47 (Length: 260)
Name: NF21580_low_47
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41869464 - 41869243
Alignment:
| Q |
1 |
tcataaggttccattgaatgatgtagggttgtcattttgacaggtctgtcacgattcaatgtacttccttagttcaatcgtcgcatatactctgtgttta |
100 |
Q |
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| T |
41869464 |
tcataaggttccattgaatgatgtagggttgtcattttgacaggtctgtcacgattcaatgtacttccttagttcaatcgtcgcatataatctgtgttta |
41869365 |
T |
|
| Q |
101 |
ttgcatgcatttcattatttatttattttcaattcaagaagggaagttgttagaccaaattacaaacaaacacaacgattaaaatagacatcggttatat |
200 |
Q |
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| T |
41869364 |
ttgcatgcatttcattatttatttattttcaattcaagaagggaagttgttagaccaaattacaaacaaacacaacgattaaaatagacatcggttatat |
41869265 |
T |
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| Q |
201 |
catatcataagatgttaacaca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
41869264 |
catatcataagatgttaacaca |
41869243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 31546487 - 31546435
Alignment:
| Q |
139 |
aagggaagttgttagaccaaattacaaacaaacacaacgattaaaatagacat |
191 |
Q |
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|||||||| ||||||||||| |||| |||||||| ||||||||||||||||| |
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| T |
31546487 |
aagggaagccgttagaccaaactacagacaaacacgacgattaaaatagacat |
31546435 |
T |
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